Solu (finnish word for Cell) Computing Server if for the interactive computing work loads. Additionally to the traditional SSH access the server provides graphical desktop environment that can be used with the Remote Desktop Connection Protocol.
Address of the server: solu.uef.fi
System provides various graphical and terminal applications for the researchers.
Additionally to browser, office-suite and text editors the following graphical applications are available:
Graphical Application | Version |
---|---|
MATLAB | R2018b |
RStudio | 3.5.1 |
RStudio | 3.6.0 |
IGV | 2.5.2 |
For the updated terminal applications use the 'module avail' command. Short list of available applications below:
kallisto/0.43.1 homer/4.9.1 bamtools/2.5.1 clustalw/2.1 hisat2/2.1.0 picard/2.18.3 python/3.7.0 (D) bamutil/1.0.13 cufflinks/2.2.1 htslib/1.9 plink/1.07 r/3.5.1 bcftools/1.9 datamash/1.3 jdk/11.0.3 prinseq-lite/0.20.4 r/3.6.0 (D) bedtools2/2.27.1 diamond/0.9.21 jdk/12.0.1 (D) py-numpy/1.15.2-python-3.7.0 samtools/1.9 bowtie/1.2 fastqc/0.11.7 matlab/R2018b py-pip/10.0.1-python-3.7.0 star/2.6.1b bowtie2/2.3.4.1-python-3.7.0 fastx-toolkit/0.0.14 mono/5.4.1.7 py-scipy/1.1.0-python-3.7.0 tabix/2013-12-16 bwa/0.7.17 gcc/8.2.0 openmpi/1.10.7-2 python/2.7.15 trimmomatic/0.36
Applications are managed with the Lmod Environment Module System. Guide for the Lmod can be found here
Quick tutorial:
Available modules:
module avail
Load module:
module load bowtie2
Unload module:
module unload bowtie2
Save list of loaded modules
module save
Restore saved modules
module restore