Solu (finnish word for Cell) Computing Server if for the interactive computing work loads. Additionally to the traditional SSH access the server provides graphical desktop environment that can be used with the Remote Desktop Connection Protocol.

Address of the server: solu.uef.fi

• CPU: 4 x AMD Opteron™ Processor 6348
• RAM: 768 GB DDR3
• OS: CentOS 7

System provides various graphical and terminal applications for the researchers.

Additionally to browser, office-suite and text editors the following graphical applications are available:

For the updated terminal applications use the 'module avail' command. Short list of available applications below:

 kallisto/0.43.1
 homer/4.9.1
 bamtools/2.5.1                  clustalw/2.1            hisat2/2.1.0            picard/2.18.3                   python/3.7.0     (D)
 bamutil/1.0.13                  cufflinks/2.2.1         htslib/1.9              plink/1.07                      r/3.5.1
 bcftools/1.9                    datamash/1.3            jdk/11.0.3              prinseq-lite/0.20.4             r/3.6.0          (D)
 bedtools2/2.27.1                diamond/0.9.21          jdk/12.0.1       (D)    py-numpy/1.15.2-python-3.7.0    samtools/1.9
 bowtie/1.2                      fastqc/0.11.7           matlab/R2018b           py-pip/10.0.1-python-3.7.0      star/2.6.1b
 bowtie2/2.3.4.1-python-3.7.0    fastx-toolkit/0.0.14    mono/5.4.1.7            py-scipy/1.1.0-python-3.7.0     tabix/2013-12-16
 bwa/0.7.17                      gcc/8.2.0               openmpi/1.10.7-2        python/2.7.15                   trimmomatic/0.36
 

Applications are managed with the Lmod Environment Module System. Guide for the Lmod can be found here

Quick tutorial:

Available modules: module avail

Load module: module load bowtie2

Unload module: module unload bowtie2

Save list of loaded modules module save

Restore saved modules module restore