Differences

This shows you the differences between two versions of the page.

--- guides:slurm:nextflow [08.03.2024 14:55]
Administrator
+++ guides:slurm:nextflow [08.03.2024 15:12] (current)
Administrator
@@ Line 1: / Line 1: @@
 # Example Nextflow config for SLURM
+Following example can be used as a [nextflow.config](https://www.nextflow.io/docs/latest/config.html) file.
-    //Profile config names for nf-core/configs
     params {
       config_profile_description = 'The University of Eastern Finland SLURM cluster profile'
@@ Line 30: / Line 32: @@
       retry.delay = '1min'
-    // max 3.d on serial queue
       time = '1.d'
       cpus = 8
-      memory = '50 GB'
+      memory = '20 GB'
       clusterOptions = '--job-name=nfSLURM \
     	--output=/directory/for/slurm/outputs/2024-03-08_output.txt \
-    	--error=/directory/for/slurm/error/outputs/2023-03-08_log-error.txt \
+    	--error=/directory/for/slurm/error/outputs/2024-03-08_log-error.txt \
     }
     params {
-    //  igenomes_ignore = true
+      max_memory = 50.GB
-      max_memory = 100.GB
       max_cpus = 32
       max_time = 3.d

Bioinformatics Center