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guides:slurm:nextflow [08.03.2024 15:04]
Administrator
guides:slurm:nextflow [21.08.2025 13:42] (current)
Administrator
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-Following example can be used as a nextflow.config file.+Following example can be used as a [nextflow.config](https://www.nextflow.io/docs/latest/config.html) file.
  
  
  
-    //Profile config names for nf-core/configs 
     params {     params {
       config_profile_description = 'The University of Eastern Finland SLURM cluster profile'       config_profile_description = 'The University of Eastern Finland SLURM cluster profile'
Line 22: Line 21:
       executor = 'slurm'       executor = 'slurm'
            
-      queue = 'serial'+      queue = 'small'
       queueSize = 16       queueSize = 16
            
Line 39: Line 38:
       clusterOptions = '--job-name=nfSLURM \       clusterOptions = '--job-name=nfSLURM \
     --output=/directory/for/slurm/outputs/2024-03-08_output.txt \     --output=/directory/for/slurm/outputs/2024-03-08_output.txt \
-    --error=/directory/for/slurm/error/outputs/2024-03-08_log-error.txt \+    --error=/directory/for/slurm/error/outputs/2024-03-08_log-error.txt'
     }     }
            
guides/slurm/nextflow.1709903093.txt.gz · Last modified: 08.03.2024 15:04 by Administrator