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guides:slurm:nextflow [08.03.2024 14:57] Administrator |
guides:slurm:nextflow [27.09.2024 12:12] (current) Administrator |
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# Example Nextflow config for SLURM | # Example Nextflow config for SLURM | ||
+ | |||
+ | |||
+ | Following example can be used as a [nextflow.config](https:// | ||
- | //Profile config names for nf-core/ | ||
params { | params { | ||
config_profile_description = 'The University of Eastern Finland SLURM cluster profile' | config_profile_description = 'The University of Eastern Finland SLURM cluster profile' | ||
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executor = ' | executor = ' | ||
- | queue = 'serial' | + | queue = 'small' |
queueSize = 16 | queueSize = 16 | ||
Line 32: | Line 34: | ||
time = ' | time = ' | ||
cpus = 8 | cpus = 8 | ||
- | memory = '50 GB' | + | memory = '20 GB' |
clusterOptions = ' | clusterOptions = ' | ||
--output=/ | --output=/ | ||
- | --error=/ | + | --error=/ |
} | } | ||
params { | params { | ||
- | max_memory = 100.GB | + | max_memory = 50.GB |
max_cpus = 32 | max_cpus = 32 | ||
max_time = 3.d | max_time = 3.d |