Bioinformatics Center

User Tools

Site Tools

You are here: home » guides » slurm » basics
guides:slurm:basics

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision 		Previous revision
guides:slurm:basics [07.06.2021 11:55]
Administrator 		guides:slurm:basics [18.10.2024 14:09] (current)
Administrator
Line 8: Line 8:
   * Optional plugins can be used for accounting, advanced reservation, gang scheduling (time sharing for parallel jobs), backfill scheduling, topology optimized resource selection, resource limits by user or bank account, and sophisticated multifactor job prioritization algorithms.   * Optional plugins can be used for accounting, advanced reservation, gang scheduling (time sharing for parallel jobs), backfill scheduling, topology optimized resource selection, resource limits by user or bank account, and sophisticated multifactor job prioritization algorithms.
  
-Bioinformatics Center uses unmodified version of Slurm on sampo.uef.fi computing cluster. This guarantees that the most of the tutorials and guides found from the Internet are applicable as-is. The most obvious starting place to search for usage information is documentation section of the Slurm own website [[https://slurm.schedmd.com|Slurm Workload Manager]].+Bioinformatics Center uses Slurm on kudos.uef.fi computing cluster. This guarantees that the most of the tutorials and guides found from the Internet are applicable as-is. The most obvious starting place to search for usage information is documentation section of the Slurm own website [[https://slurm.schedmd.com|Slurm Workload Manager]].
  
 {{ :guides:slurm:slurm.png |}} {{ :guides:slurm:slurm.png |}}
Line 34: Line 34:
 #SBATCH --time 5 # Runtime in minutes. #SBATCH --time 5 # Runtime in minutes.
 #SBATCH --mem=2000 # Reserve 2 GB RAM for the job #SBATCH --mem=2000 # Reserve 2 GB RAM for the job
-#SBATCH --partition serial # Partition to submit +#SBATCH --partition small # Partition to submit 
-#SBATCH --auks=yes         # Enable kerberos support with auks + 
-module load matlab/R2018b # load modules+module load matlab/R2022b # load modules
  
 matlab -nodisplay < matlab.m # Execute the script matlab -nodisplay < matlab.m # Execute the script
Line 56: Line 56:
 #SBATCH --time 00:30:00     # Runtime 30min #SBATCH --time 00:30:00     # Runtime 30min
 #SBATCH --mem 2000          # Reserve 2 GB RAM for the job #SBATCH --mem 2000          # Reserve 2 GB RAM for the job
-#SBATCH --partition serial  # Partition to submit +#SBATCH --partition small   # Partition to submit
-#SBATCH --auks=yes     # Enable kerberos support with auks+
  
 module load bcftools # load modules module load bcftools # load modules
Line 106: Line 105:
 ``` ```
 scontrol show job <jobid> scontrol show job <jobid>
-``` 
- 
-#### Extend runtime of given jobid 
- 
-``` 
-scontrol update jobid=<job_id> TimeLimit=<new_timelimit> 
 ``` ```
  
guides/slurm/basics.1623056158.txt.gz · Last modified: 07.06.2021 11:55 by Administrator

Page Tools