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guides:slurm:using-r

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guides:slurm:using-r [23.09.2019 11:12]
Teemu Kuulasmaa 		guides:slurm:using-r [18.10.2024 14:10] (current)
Administrator
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-# Using R with SLURM+# Using R with Slurm
  
 Example script (**hello.R**): Example script (**hello.R**):
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 #SBATCH --time 5 # Runtime in minutes. #SBATCH --time 5 # Runtime in minutes.
 #SBATCH --mem=2000 # Reserve 2 GB RAM for the job #SBATCH --mem=2000 # Reserve 2 GB RAM for the job
-#SBATCH --partition serial # Partition to submit+#SBATCH --partition small # Partition to submit
 #SBATCH --output hello.out # Standard out goes to this file #SBATCH --output hello.out # Standard out goes to this file
 #SBATCH --error hello.err # Standard err goes to this file #SBATCH --error hello.err # Standard err goes to this file
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 #SBATCH --mail-type ALL # ALL will alert you of job beginning, completion, failure etc #SBATCH --mail-type ALL # ALL will alert you of job beginning, completion, failure etc
  
-module load r # load modules+module load r/4.0.0 # load modules
  
 Rscript hello.R # Execute the script Rscript hello.R # Execute the script
  
 ``` ```
-The last step is to submit the job to the compute queue with the **[sbatch](https://slurm.schedmd.com/sbatch.html)** command. Note that the batch file (and R script and data) must be located at local file system of login node, e.g. /home/users/ disk.+The last step is to submit the job to the compute queue with the **[sbatch](https://slurm.schedmd.com/sbatch.html)** command.
  
 ``` ```
 sbatch scriptR.sbatch sbatch scriptR.sbatch
 ``` ```
guides/slurm/using-r.1569226326.txt.gz · Last modified: 29.10.2019 15:10 (external edit)

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