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--- guides:slurm:array-job [05.03.2020 16:10]
Juha Kekäläinen
+++ guides:slurm:array-job [18.10.2024 14:09] (current)
Administrator
@@ Line 12: / Line 12: @@
 #SBATCH --time 5                                # Runtime in minutes.
 #SBATCH --mem=500                               # Reserve 500 MB RAM for the job
-#SBATCH --partition serial                      # Partition to submit
+#SBATCH --partition small                       # Partition to submit
 #SBATCH --output fastq_%A_%a.out.out            # Standard output goes to here
 #SBATCH --error fastqc_%A_%a.err                # Standard error goes to here
-##SBATCH --mail-user username@uef.fi            # this is the email you wish to be notified at
+#SBATCH --mail-user username@uef.fi            # this is the email you wish to be notified at
-##SBATCH --mail-type ALL                        # ALL will alert you of job beginning, completion, failure etc
+#SBATCH --mail-type ALL                        # ALL will alert you of job beginning, completion, failure etc
 #SBATCH --array=1-100%3                         # Array range and number of simultanous jobs
-# Make sure that the results exists
+# Make sure that the results directory exists
 mkdir -p ./results/
 # Load required modules
-module load fastqc/0.11.7
+module load fastqc/0.12.1
 # Search all the fastq files from the "data" directory and generate the array

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