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guides:slurm:array-job [05.03.2020 16:10] Juha Kekäläinen |
guides:slurm:array-job [18.10.2024 14:09] (current) Administrator |
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#SBATCH --time 5 # Runtime in minutes. | #SBATCH --time 5 # Runtime in minutes. | ||
#SBATCH --mem=500 | #SBATCH --mem=500 | ||
- | #SBATCH --partition | + | #SBATCH --partition |
#SBATCH --output fastq_%A_%a.out.out | #SBATCH --output fastq_%A_%a.out.out | ||
#SBATCH --error fastqc_%A_%a.err | #SBATCH --error fastqc_%A_%a.err | ||
- | ##SBATCH --mail-user username@uef.fi | + | #SBATCH --mail-user username@uef.fi |
- | ##SBATCH --mail-type ALL # ALL will alert you of job beginning, completion, failure etc | + | #SBATCH --mail-type ALL # ALL will alert you of job beginning, completion, failure etc |
#SBATCH --array=1-100%3 | #SBATCH --array=1-100%3 | ||
- | # Make sure that the results exists | + | # Make sure that the results |
mkdir -p ./results/ | mkdir -p ./results/ | ||
# Load required modules | # Load required modules | ||
- | module load fastqc/0.11.7 | + | module load fastqc/0.12.1 |
# Search all the fastq files from the " | # Search all the fastq files from the " |