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infrastructure:solu [13.10.2020 10:32] Juha Kekäläinen |
infrastructure:solu [13.10.2020 12:14] (current) Juha Kekäläinen |
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|[Singularity Container](https:// | |[Singularity Container](https:// | ||
- | In the terminal, you can see the list of available software packages by command | + | To see the list of terminal application visit the [available applications](https:// |
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- | ## Lmod Module Environment | + | |
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- | Applications are managed with the [Lmod Environment Module System](https://lmod.readthedocs.io/en/latest/). Guide for the Lmod can be found [here](https:// | + | |
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- | ## Quick tutorial: | + | |
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- | ** Available modules ** | + | |
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- | module avail | + | |
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- | ** Load module ** | + | |
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- | module load bowtie2 | + | |
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- | ** If you wish to Load some specific version number ** | + | |
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- | module load python/ | + | |
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- | ** Unload module ** | + | |
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- | module unload bowtie2 | + | |
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- | ** Save list of loaded modules ** | + | |
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- | module save | + | |
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- | ** Restore saved modules ** | + | |
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- | module restore | + | |
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- | ## Application location | + | |
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- | You can quickly go to the application location by writing: | + | |
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- | module load bowtie2 | + | |
- | cd $BOWTIE2_ROOT | + | |