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infrastructure:solu [29.10.2019 15:10] 127.0.0.1 external edit |
infrastructure:solu [13.10.2020 10:32] Juha Kekäläinen |
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Server address: **solu.uef.fi** | Server address: **solu.uef.fi** | ||
- | ### System specs | + | ## System specs |
- CPU: 48 Cores (4 x AMD Opteron(tm) Processor 6348) | - CPU: 48 Cores (4 x AMD Opteron(tm) Processor 6348) | ||
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- OS: CentOS 7 Linux | - OS: CentOS 7 Linux | ||
- | ### Storage | + | ## Storage |
Server is connected to the storage space provided by the [UEF IT Services for Research](https:// | Server is connected to the storage space provided by the [UEF IT Services for Research](https:// | ||
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All the available reference data sets are provided as-is. They are unmodified copies of the original files. | All the available reference data sets are provided as-is. They are unmodified copies of the original files. | ||
- | ### iGenomes | + | ## iGenomes |
URL: [[https:// | URL: [[https:// | ||
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|rn4 | | |rn4 | | ||
- | ### gnomAD | + | ## gnomAD |
URL: [[https:// | URL: [[https:// | ||
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|Structural variants (.vcf.gz, tbi) | | |Structural variants (.vcf.gz, tbi) | | ||
- | ### Applications | + | ## Applications |
System provides various graphical and terminal applications for the researchers. | System provides various graphical and terminal applications for the researchers. | ||
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In the terminal, you can see the list of available software packages by command | In the terminal, you can see the list of available software packages by command | ||
- | 'modul avail' | + | 'module |
- | homer/ | + | |
- | bamtools/ | + | |
- | | + | |
- | | + | |
- | | + | blast-plus/2.7.1 |
- | bowtie/1.2 fastx-toolkit/ | + | |
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+ | | ||
+ | | ||
- | ### Lmod Module Environment | + | ## Lmod Module Environment |
Applications are managed with the [Lmod Environment Module System](https:// | Applications are managed with the [Lmod Environment Module System](https:// | ||
- | ### Quick tutorial: | + | ## Quick tutorial: |
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- | ### Application location | + | ## Application location |
You can quickly go to the application location by writing: | You can quickly go to the application location by writing: | ||