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infrastructure:solu [30.09.2019 13:54]
Teemu Kuulasmaa 		infrastructure:solu [29.10.2019 15:10]
127.0.0.1 external edit
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 ## Available reference data set ## Available reference data set
 +
 +All the available reference data sets are provided as-is. They are unmodified copies of the original files. 
  
 ### iGenomes ### iGenomes
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 ^Mus musculus ^Version^ ^Mus musculus ^Version^
-|mm9                             |   UCSC       | +|mm9                              |   UCSC       | 
-|mm10                             |   UCSC          |+|mm10                             |   UCSC       |
  
 ^Rattus norvegicus ^Version^ ^Rattus norvegicus ^Version^
-|rn4                             |   UCSC       |+|rn4                              |   UCSC       |
  
 ### gnomAD ### gnomAD
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 URL: [[https://gnomad.broadinstitute.org/downloads]] URL: [[https://gnomad.broadinstitute.org/downloads]]
  
-Following reference genomes can be found from the ** /apps/genomes/gnomAD ** folder.+Following variants can be found from the ** /research/groups/bioinformaticians/gnomAD-hg19-r2.1.1 ** folder.
  
-^Home sapiens ^Version^ +^Data set ^Version^ 
-|Exome variants (.vcf.bgz)         |   gnomAD 2.1.1 / hg19       | +|Exome variants (.vcf.bgz, tbi)          |   gnomAD 2.1.1 / hg19       | 
-|Genome variants (.vcf.bgz)        |   gnomAD 2.1.1 / hg19       |+|Exome calling regions (.interval list)  |   gnomAD 2.1.1 / hg19       | 
 +|Genome variants (.vcf.bgz, tbi)         |   gnomAD 2.1.1 / hg19       | 
 +|Genome calling regions (.interval list) |   gnomAD 2.1.1 / hg19       | 
 +|Structural variants (.vcf.gz, tbi)      |   gnomAD 2.1.1 / hg19       |
  
 ### Applications ### Applications
infrastructure/solu.txt · Last modified: 13.10.2020 12:14 by Juha Kekäläinen

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