infrastructure:solu
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infrastructure:solu [30.09.2019 13:32] Teemu Kuulasmaa |
infrastructure:solu [29.10.2019 15:10] 127.0.0.1 external edit |
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| ## Available reference data set | ## Available reference data set | ||
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| + | All the available reference data sets are provided as-is. They are unmodified copies of the original files. | ||
| ### iGenomes | ### iGenomes | ||
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| + | URL: [[https:// | ||
| Following reference genomes can be found from the ** / | Following reference genomes can be found from the ** / | ||
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| ^Mus musculus ^Version^ | ^Mus musculus ^Version^ | ||
| - | |mm9 | + | |mm9 | |
| - | |mm10 | + | |mm10 |
| ^Rattus norvegicus ^Version^ | ^Rattus norvegicus ^Version^ | ||
| - | |rn4 | + | |rn4 | |
| ### gnomAD | ### gnomAD | ||
| - | Following reference genomes can be found from the ** /apps/genomes/ | + | URL: [[https://gnomad.broadinstitute.org/ |
| - | ^Home sapiens | + | Following variants can be found from the ** / |
| - | |All chromosomes VCF (.tbi) | + | |
| + | ^Data set ^Version^ | ||
| + | |Exome variants | ||
| + | |Exome calling regions (.interval list) | | ||
| + | |Genome variants (.vcf.bgz, | ||
| + | |Genome calling regions (.interval list) | | ||
| + | |Structural variants (.vcf.gz, tbi) | | ||
| ### Applications | ### Applications | ||
infrastructure/solu.txt · Last modified: 13.10.2020 12:14 by Juha Kekäläinen