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infrastructure:solu [26.09.2019 13:33]
Teemu Kuulasmaa 		infrastructure:solu [29.10.2019 15:10]
127.0.0.1 external edit
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 Server is connected to the storage space provided by the [UEF IT Services for Research](https://www.uef.fi/web/tipa/tipa). More information can be found from the [[infrastructure:guides:storage-space|dedicated page]]. Server is connected to the storage space provided by the [UEF IT Services for Research](https://www.uef.fi/web/tipa/tipa). More information can be found from the [[infrastructure:guides:storage-space|dedicated page]].
 +
 +
 +## Available reference data set
 +
 +All the available reference data sets are provided as-is. They are unmodified copies of the original files. 
  
 ### iGenomes ### iGenomes
 +
 +URL: [[https://support.illumina.com/sequencing/sequencing_software/igenome.html]]
  
 Following reference genomes can be found from the ** /apps/genomes/iGenomes ** folder. Following reference genomes can be found from the ** /apps/genomes/iGenomes ** folder.
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 ^Mus musculus ^Version^ ^Mus musculus ^Version^
-|mm9                             |   UCSC       | +|mm9                              |   UCSC       | 
-|mm10                             |   UCSC          |+|mm10                             |   UCSC       |
  
 ^Rattus norvegicus ^Version^ ^Rattus norvegicus ^Version^
-|rn4                             |   UCSC       |+|rn4                              |   UCSC       | 
 + 
 +### gnomAD 
 + 
 +URL: [[https://gnomad.broadinstitute.org/downloads]] 
 + 
 +Following variants can be found from the ** /research/groups/bioinformaticians/gnomAD-hg19-r2.1.1 ** folder. 
 + 
 +^Data set ^Version^ 
 +|Exome variants (.vcf.bgz, tbi)          |   gnomAD 2.1.1 / hg19       | 
 +|Exome calling regions (.interval list)  |   gnomAD 2.1.1 / hg19       | 
 +|Genome variants (.vcf.bgz, tbi)         |   gnomAD 2.1.1 / hg19       | 
 +|Genome calling regions (.interval list) |   gnomAD 2.1.1 / hg19       | 
 +|Structural variants (.vcf.gz, tbi)      |   gnomAD 2.1.1 / hg19       |
  
 ### Applications ### Applications
infrastructure/solu.txt · Last modified: 13.10.2020 12:14 by Juha Kekäläinen

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