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infrastructure:solu [26.09.2019 13:33] Teemu Kuulasmaa |
infrastructure:solu [11.10.2019 19:13] Teemu Kuulasmaa |
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Server is connected to the storage space provided by the [UEF IT Services for Research](https:// | Server is connected to the storage space provided by the [UEF IT Services for Research](https:// | ||
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+ | ## Available reference data set | ||
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+ | All the available reference data sets are provided as-is. They are unmodified copies of the original files. | ||
### iGenomes | ### iGenomes | ||
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+ | URL: [[https:// | ||
Following reference genomes can be found from the ** / | Following reference genomes can be found from the ** / | ||
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^Mus musculus ^Version^ | ^Mus musculus ^Version^ | ||
- | |mm9 | + | |mm9 | |
- | |mm10 | + | |mm10 |
^Rattus norvegicus ^Version^ | ^Rattus norvegicus ^Version^ | ||
- | |rn4 | + | |rn4 | |
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+ | ### gnomAD | ||
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+ | URL: [[https:// | ||
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+ | Following variants can be found from the ** / | ||
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+ | ^Data set ^Version^ | ||
+ | |Exome variants (.vcf.bgz, tbi) | | ||
+ | |Exome calling regions (.interval list) | | ||
+ | |Genome variants (.vcf.bgz, tbi) | ||
+ | |Genome calling regions (.interval list) | | ||
+ | |Structural variants (.vcf.gz, tbi) | | ||
### Applications | ### Applications |