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Please find below annual lists of the publications that took advantage of the services provided by Bioinformatics Center. | Please find below annual lists of the publications that took advantage of the services provided by Bioinformatics Center. | ||
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+ | ## 2024 | ||
+ | Sallamaari Siponen, Balamuralikrishna Jayaprakash, | ||
+ | Water Research, Volume 248, 2024, 120858, ISSN 0043-1354, https:// | ||
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+ | ## 2023 | ||
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+ | Juho Mononen, Mari Taipale, Marjo Malinen, Bharadwaja Velidendla, Einari Niskanen, Anna-Liisa Levonen, Anna-Kaisa Ruotsalainen, | ||
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+ | Laura Helminen, Jasmin Huttunen, Melina Tulonen, Niina Aaltonen, Einari A Niskanen, Jorma J Palvimo, Ville Paakinaho, **Chromatin accessibility and pioneer factor FOXA1 restrict glucocorticoid receptor action in prostate cancer**, Nucleic Acids Research, 2023;, gkad1126, https:// | ||
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+ | Csader, S.; Ismaiah, M.J.; Kuningas, T.; Heinäniemi, | ||
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+ | Lipponen, A.; Kajevu, N.; Natunen, T.; Ciszek, R.; Puhakka, N.; Hiltunen, M.; Pitkänen, A. **Gene Expression Profile as a Predictor of Seizure Liability**. Int. J. Mol. Sci. 2023, 24, 4116. https:// | ||
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+ | ## 2022 | ||
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+ | Samms RJ, Cheng CC, Fourcaudot M, Heikkinen S, Khattab A, Adams J, Cersosimo E, Triplitt C, Puckett C, Tsintzas K, Adams AC, Abdul-Ghani MA, DeFronzo RA, Norton L. **FGF21 contributes to metabolic improvements elicited by combination therapy with exenatide and pioglitazone in patients with type 2 diabetes** Am J Physiol Endocrinol Metab. 2022 Aug 1; | ||
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+ | Kainulainen K, Takabe P, Heikkinen S, Aaltonen N, de la Motte C, Rauhala L, Durst FC, Oikari S, Hukkanen T, Rahunen E, Ikonen E, Hartikainen JM, Ketola K, Pasonen-Seppänen S. **M1 Macrophages Induce Protumor Inflammation in Melanoma Cells through TNFR-NF-κB Signaling** J Invest Dermatol. 2022 Nov; | ||
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+ | Kärkkäinen E, Heikkinen S, Tengström M, Kosma VM, Mannermaa A, Hartikainen JM. **Expression profiles of small non-coding RNAs in breast cancer tumors characterize clinicopathological features and show prognostic and predictive potential** Sci Rep. 2022 Dec 30; | ||
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+ | Raittio, E, Sofi-Mahmudi, | ||
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+ | Ghahremani, Morteza and Khateri, Mohammad and Sierra, Alejandra and Tohka, Jussi, **Adversarial Distortion Learning for Medical Image Denoising**, | ||
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+ | Hanel, A.; Carlberg, C. **Time-Resolved Gene Expression Analysis Monitors the Regulation of Inflammatory Mediators and Attenuation of Adaptive Immune Response by Vitamin D**. Int. J. Mol. Sci. 2022, 23, 911. https:// | ||
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+ | Luca Cattelani, Vittorio Fortino, **Improved NSGA-II algorithms for multi-objective biomarker discovery, Bioinformatics**, | ||
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+ | Maria-Elisa Nordberg, Martin Täubel, Sami Heikkinen, Kaisa Jalkanen, Arto Köliö, Marianne Stranger, Hanna Leppänen, Anne Hyvärinen, Kati Huttunen, **Toxicological transcriptome of human airway constructs after exposure to indoor air particulate matter: In search of relevant pathways of moisture damage-associated health effects**, Environment International, | ||
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+ | Jäntti, H., Sitnikova, V., Ishchenko, Y. et al. **Microglial amyloid beta clearance is driven by PIEZO1 channels**. J Neuroinflammation 19, 147 (2022). https:// | ||
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+ | Valverde, J.M., Shatillo, A., De Feo, R. et al. **Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks**. Neuroinform (2022). https:// | ||
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+ | Oksa, L.; Mäkinen, A.; Nikkilä, A.; Hyvärinen, N.; Laukkanen, S.; Rokka, A.; Haapaniemi, P.; Seki, M.; Takita, J.; Kauko, O.; Heinäniemi, | ||
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+ | Saara Laukkanen, Alexandra Bacquelaine Veloso, Chuan Yan, Laura Oksa, Eric J. Alpert, Daniel Do, Noora Hyvärinen, Karin McCarthy, Abhinav Adhikari, Qiqi Yang, Sowmya Iyer, Sara P. Garcia, Annukka Pello, Tanja Ruokoranta, Sanni Moisio, Sadiksha Adhikari, Jeffrey A. Yoder, Kayleigh Mary Gallagher, Lauren Whelton, James R. Allen, Alexander Hai Jin, Siebe Loontiens, Merja Heinäniemi, | ||
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+ | Céline Vandamme, Marja Rytkönen-Nissinen, | ||
+ | **Single-cell characterization of dog allergen–specific T cells reveals TH2 heterogeneity in allergic individuals**, | ||
+ | Journal of Allergy and Clinical Immunology, | ||
+ | Volume 149, Issue 5, | ||
+ | 2022, | ||
+ | Pages 1732-1743.e15, | ||
+ | ISSN 0091-6749, | ||
+ | https:// | ||
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+ | Timo A. Lakka, Kirsikka Aittola, Elina Järvelä-Reijonen, | ||
+ | **Real-world effectiveness of digital and group-based lifestyle interventions as compared with usual care to reduce type 2 diabetes risk – A stop diabetes pragmatic randomised trial, | ||
+ | The Lancet Regional Health - Europe **, | ||
+ | 2022, | ||
+ | 100527, | ||
+ | ISSN 2666-7762, | ||
+ | https:// | ||
## 2021 | ## 2021 | ||
- | Launonen, KM., Paakinaho, V., Sigismondo, G. et al. **Chromatin-directed proteomics-identified network of endogenous androgen receptor in prostate cancer cells**. Oncogene 40, 4567–4579 (2021). https:// | + | A. Abdollahzadeh, A. Sierra and J. Tohka, **Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects**, in IEEE Access, vol. 9, pp. 23979-23995, 2021, http://dx.doi.org/ |
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+ | Prakash, Mithilesh | ||
Petteri Stenroos, Tiina Pirttimäki, | Petteri Stenroos, Tiina Pirttimäki, |