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guides:application-installation

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guides:application-installation [29.10.2019 15:10]
127.0.0.1 external edit 		guides:application-installation [14.03.2020 14:03] (current)
Teemu Kuulasmaa
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 There are four different methods to get your favorite application installed on Bioinformatics Center's servers. The three first options doesn't require system administrator privileges and can be carried out by user. There are four different methods to get your favorite application installed on Bioinformatics Center's servers. The three first options doesn't require system administrator privileges and can be carried out by user.
  
-## 1. Download binaries+## Download binaries
  
 You can always download already compiled binaries from Internet. All you need to do is extract downloaded archive file (e.g. *.gz, *.zip) files to any directory (e.g. $HOME/bin/). Please make sure that the binaries have been compiled for appropriate platform e.g. "linux 64-bit", "linux x64".  You can always download already compiled binaries from Internet. All you need to do is extract downloaded archive file (e.g. *.gz, *.zip) files to any directory (e.g. $HOME/bin/). Please make sure that the binaries have been compiled for appropriate platform e.g. "linux 64-bit", "linux x64". 
  
-## 2. Download source code and compile+## Download source code and compile
  
 Always ready-made binaries are not available or you need to recompile application from the source code again. In this case download the source code to the server, extract source code and follow installation instructions. Normally you will find compilation and installation instructions from among the downloaded files (search for README or INSTALLATION files). The most often you just need to do something like this: Always ready-made binaries are not available or you need to recompile application from the source code again. In this case download the source code to the server, extract source code and follow installation instructions. Normally you will find compilation and installation instructions from among the downloaded files (search for README or INSTALLATION files). The most often you just need to do something like this:
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-## 3. Use conda and configure Bioconda channel+## Use conda and configure Bioconda channel
  
 Follow instructions from [[https://bioconda.github.io/user/install.html#install-conda|Bioconda]]. In short this procedure requires Miniconda installation, channels configuration and application installation. Follow instructions from [[https://bioconda.github.io/user/install.html#install-conda|Bioconda]]. In short this procedure requires Miniconda installation, channels configuration and application installation.
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-## 4. Request system wide install+## Request system wide install
  
 If you prefer to have system wide installation of you favorite application you need to send software installation request to bioinformatics@uef.fi. The system wide installation requires system administrator privileges.  If you prefer to have system wide installation of you favorite application you need to send software installation request to bioinformatics@uef.fi. The system wide installation requires system administrator privileges. 
guides/application-installation.1572354625.txt.gz · Last modified: 29.10.2019 15:10 by 127.0.0.1

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