name	Unique Positions	Total Tags
genome=mm9	39809385	52336162.0
fragmentLengthEstimate=75		
peakSizeEstimate=75		
tagsPerBP=0.019810		
averageTagsPerPosition=1.314		
averageTagLength=44.162		
gsizeEstimate=2641846425		
averageFragmentGCcontent=0.454		
chr1	2699602	3602256.0
chr2	3100278	4031545.0
chr3	2071858	2751223.0
chr4	2591328	3477671.0
chr5	2452647	3181007.0
chr6	2304017	2977685.0
chr7	2239533	2839125.0
chr8	2114371	2810524.0
chr9	2169013	2880533.0
chr10	1912329	2389340.0
chr11	2860081	3989565.0
chr12	1665115	2170746.0
chr13	1578521	2059698.0
chr14	1645716	2045588.0
chr15	1651124	2090277.0
chr16	1407492	1754179.0
chr17	1657392	2111850.0
chr18	1375409	1847065.0
chr19	1605868	2424603.0
chrX	684567	871198.0
chrY	18348	20517.0
chrM	4776	9967.0
cmd=makeTagDirectory /home/data/data_merja/ngs_pipelines/grores/tagdirs/GSE59486_22h_1_UCSC_mm9 GSE59486_22h_1_UCSC_mm9_filtered.bed -genome mm9 -checkGC -fragLength 75