name	Unique Positions	Total Tags
genome=mm9	23509496	29801666.0
fragmentLengthEstimate=75		
peakSizeEstimate=75		
tagsPerBP=0.011281		
averageTagsPerPosition=1.266		
averageTagLength=37.408		
gsizeEstimate=2641854172		
averageFragmentGCcontent=0.462		
chr1	1524207	1915523.0
chr2	1832565	2210964.0
chr3	1281570	1663216.0
chr4	1563455	2035293.0
chr5	1428513	1735087.0
chr6	1341036	1648445.0
chr7	1300778	1595513.0
chr8	1286727	1596606.0
chr9	1250690	1661693.0
chr10	1067978	1268880.0
chr11	1688757	2304826.0
chr12	1009136	1305453.0
chr13	947266	1197286.0
chr14	948446	1139081.0
chr15	1044758	1265470.0
chr16	869051	1093265.0
chr17	933726	1139449.0
chr18	815452	1067458.0
chr19	978663	1411996.0
chrX	383754	526509.0
chrY	8834	9762.0
chrM	4134	9891.0
cmd=makeTagDirectory /home/data/data_merja/ngs_pipelines/grores/tagdirs/GSE59486_16h_UCSC_mm9 GSE59486_16h_UCSC_mm9_filtered.bed -genome mm9 -checkGC -fragLength 75