name	Unique Positions	Total Tags
genome=mm9	43678140	57762566.0
fragmentLengthEstimate=75		
peakSizeEstimate=75		
tagsPerBP=0.021864		
averageTagsPerPosition=1.321		
averageTagLength=40.609		
gsizeEstimate=2641879298		
averageFragmentGCcontent=0.462		
chr1	2859482	3733418.0
chr2	3412144	4416282.0
chr3	2263249	2993219.0
chr4	2878517	3889986.0
chr5	2702411	3515470.0
chr6	2536973	3271142.0
chr7	2492028	3194920.0
chr8	2301392	3021243.0
chr9	2333039	3188644.0
chr10	2079060	2609327.0
chr11	3141731	4453952.0
chr12	1817685	2466202.0
chr13	1701901	2174984.0
chr14	1817826	2258365.0
chr15	1911501	2513253.0
chr16	1599387	2058853.0
chr17	1818224	2333779.0
chr18	1481149	1964479.0
chr19	1761663	2694126.0
chrX	744560	977988.0
chrY	19063	21356.0
chrM	5155	11578.0
cmd=makeTagDirectory /home/data/data_merja/ngs_pipelines/grores/tagdirs/GSE59486_10h_1_UCSC_mm9 GSE59486_10h_1_UCSC_mm9_filtered.bed -genome mm9 -checkGC -fragLength 75