Gene ID (cmd=analyzeRNA.pl test.txt none -d WT_048_01 WT_048_02 WT_068_01 WT_068_02 WT_094_01 WT_094_02 WT_120 -rpkm) chr start end strand mRNA Length(avg) Gene Length(avg) Copies in Genome Symbol Alias Description type Unigene GeneID Ensembl WT_048_01 genes (Total: 452924.0) RPKM WT_048_02 genes (Total: 552074.0) RPKM WT_068_01 genes (Total: 1622905.0) RPKM WT_068_02 genes (Total: 1340221.0) RPKM WT_094_01 genes (Total: 3219737.0) RPKM WT_094_02 genes (Total: 1658404.0) RPKM WT_120 genes (Total: 7398556.0) RPKM chr start end strand mRNA Length(avg) Gene Length(avg) Copies in Genome Symbol Alias Description type Unigene GeneID Ensembl R2C2_048_01 genes (Total: 322690.0) RPKM R2C2_048_02 genes (Total: 543146.0) RPKM R2C2_068 genes (Total: 3102760.0) RPKM R2C2_094_01 genes (Total: 3111689.0) RPKM R2C2_094_02 genes (Total: 3663152.0) RPKM R2C2_120 genes (Total: 5831214.0) RPKM AcOrf-111 Bacmid_dCC_AAV2wt 109726 109929 - 203 203 1 7471.97422349439 7450.63251051641 6258.92179023436 1911.30892194631 6093.87961040682 3199.11114493925 5192.06627664211 Bacmid_dCC_Rep2 111209 111412 - 203 203 1 2763.10271704592 5795.46429731881 3307.08264378887 5775.14120137125 1765.68711742415 1186.91961331034 Ac-HisP Bacmid_dCC_AAV2wt 41311 41859 - 548 548 1 2977.40933575037 2997.98485176098 2719.95808543466 3402.58731813797 2496.01018665965 3473.79100937377 1902.37358725785 Bacmid_dCC_Rep2 42794 43342 - 548 548 1 3602.24599189342 2939.75345205 2789.48725942422 1993.89449332623 2799.13299667513 2854.00874782222 AcOrf-20 Bacmid_dCC_AAV2wt 29591 29800 - 209 209 1 1912.08394373884 1343.34671485774 1043.67162853415 535.511195006119 1093.73253171873 1139.62107731895 981.052681866786 Bacmid_dCC_Rep2 31074 31283 - 209 209 1 800.685505412708 1030.6779621689 613.745897232043 901.06297615095 464.995523608262 291.288330920704 AcOrf-22 Bacmid_dCC_AAV2wt 30879 32027 + 1148 1148 1 684.672328286258 766.826453944926 641.942594723594 1008.0765009407 534.594706151682 919.19112827902 295.400895754037 Bacmid_dCC_Rep2 32362 33510 + 1148 1148 1 1074.37446301523 755.374697861346 660.028299857386 491.291271267567 862.958956053141 880.459256248086 AcOrf-25 Bacmid_dCC_AAV2wt 34761 35711 - 950 950 1 6465.59036975647 6721.06695078825 4931.37792707327 4911.9942865668 5492.43945276145 4755.99939523339 2113.35691365777 Bacmid_dCC_Rep2 36244 37194 - 950 950 1 8122.50962713114 8440.10731242756 4240.36731982594 2664.3171331677 2434.77403296971 1428.97029314091 mRNA_VP2/3 Bacmid_dCC_AAV2wt 8200 10799 + 2599 2599 1 2781.29504090269 2765.46451064827 1907.09656604681 2706.39267252133 1212.70112562277 2664.61447904373 1180.72601794834 AcOrf-81 Bacmid_dCC_AAV2wt 80404 81105 - 701 701 1 24425.2180830242 27761.9959949031 33125.9946626855 24788.8514130669 35259.9660791267 30964.9239752882 22894.5473393562 Bacmid_dCC_Rep2 81887 82588 - 701 701 1 22386.7047729878 26080.4238431846 24272.2557684549 28716.4409363804 20717.1738761285 9710.64030291286 Ac-GTA Bacmid_dCC_AAV2wt 47588 49108 + 1520 1520 1 2518.72162588914 2264.18922101023 1952.71993577469 2138.29620165943 1986.51400147868 2296.12008704882 1251.13318698519 Bacmid_dCC_Rep2 49071 50591 + 1520 1520 1 2572.9435616063 2338.95626008864 1622.28230078348 1406.62311825203 1563.04130834234 1353.76251795397 AcOrf-79 Bacmid_dCC_AAV2wt 78868 79182 - 314 314 1 8304.1448384614 9593.23993513377 10225.8243096632 15559.749611977 9163.22814980721 13294.5715884893 4757.77123842477 Bacmid_dCC_Rep2 80351 80665 - 314 314 1 11744.4262828022 10114.4638333862 10777.3370953151 9948.10664328564 14599.6922103547 8925.71781804562 Ac-odv-ec27 Bacmid_dCC_AAV2wt 137040 137912 + 872 872 1 50226.6455542413 57128.1944552506 57397.21632369 70469.6868116828 49689.9380632927 49895.9882043328 61413.5460531793 Bacmid_dCC_Rep2 138523 139395 + 872 872 1 71062.6070239253 56694.8444463391 63593.8692523649 52808.7933223416 68981.9897622234 85108.2473854889 Ac-p95 Bacmid_dCC_AAV2wt 81462 84005 + 2543 2543 1 1485.51935699791 1342.66509842053 1753.55387817855 2123.12605184542 2405.89916626759 2234.5937548342 1817.79740460336 Bacmid_dCC_Rep2 82945 85488 + 2543 2543 1 1497.68339818684 1466.81889360445 1758.73758244705 1364.58558221383 1790.90624069879 1624.47649403965 T7_promoter Bacmid_dCC_AAV2wt 11367 11385 - 18 18 1 3066.49435421592 1710.72074476328 1506.21536346517 1616.64879647958 1294.10155757028 1574.47227039437 420.502475227747 Bacmid_dCC_Rep2 12850 12868 - 18 18 1 3787.6048908309 3170.82740593177 2488.82357069906 1249.76785562082 2805.71971290784 1934.03599623986 AcOrf-18 Bacmid_dCC_AAV2wt 27976 29037 - 1061 1061 1 1972.72986466882 2012.80233106206 1556.99899344748 2170.22178754557 1362.64869002594 2402.29605079965 564.85026849463 Bacmid_dCC_Rep2 29459 30520 - 1061 1061 1 3136.91961912188 2384.26631612005 1445.30954162254 1016.80991576334 1429.01093378925 823.188533539289 Ac-cg30 Bacmid_dCC_AAV2wt 88315 89109 - 794 794 1 18775.2875483116 17273.9957496115 23116.0254914033 20741.719958863 29495.7364076334 20144.7056648443 38123.0358487693 Bacmid_dCC_Rep2 89798 90592 - 794 794 1 13828.1837822218 16470.4220020314 22644.1767470989 27583.8921250712 22535.3405574634 25191.6641863341 AcOrf-45 Bacmid_dCC_AAV2wt 49733 50311 + 578 578 1 6222.54307642347 6214.37678237132 5349.45723850378 4323.25537882097 5764.08058466011 5761.78260652972 5839.07076482524 Bacmid_dCC_Rep2 51216 51794 + 578 578 1 5474.09583860414 7176.56739703969 4714.52116233962 4528.63236066654 3282.00723024351 2083.99985576728 Ac-sod Bacmid_dCC_AAV2wt 39398 39853 + 455 455 1 1480.00474766113 1417.23316515102 1038.70176363637 1810.42800133234 1043.70001662855 1675.11775057343 641.645849170126 Bacmid_dCC_Rep2 40881 41336 + 455 455 1 1954.7219646386 1699.5005451148 1290.59147481455 745.152011875647 1356.54506535104 1850.97075727398 AcOrf-41 Bacmid_dCC_AAV2wt 46959 47504 + 545 545 1 1158.62847233054 1216.4304658932 1015.28211572356 1456.69525994717 1003.55794915872 1502.49463898185 602.3987294203 Bacmid_dCC_Rep2 48442 48987 + 545 545 1 1461.33946830557 1185.75244455028 904.196453208099 644.506757312817 990.774556492644 1082.752488228 AcOrf-140 Bacmid_dCC_AAV2wt 134308 134490 + 182 182 1 2159.3511892105 2099.97329948641 2325.9064915847 2849.29225753164 1686.029457863 2842.66422071203 1194.17421928885 Bacmid_dCC_Rep2 135791 135973 + 182 182 1 2809.48714429764 2670.64371375182 2243.65998708842 2463.23947053679 2971.37967100885 3075.52868649067 AcOrf-121 Bacmid_dCC_AAV2wt 116225 116401 + 176 176 1 1768.80969795454 3190.44844778714 2842.82589777982 1004.75287963023 3144.66678489579 1846.65497671255 5487.09652384746 Bacmid_dCC_Rep2 117708 117884 + 176 176 1 1091.67537659279 1841.12559054103 2047.29747942887 3984.2436929678 1594.50361079996 1404.08155145738 AcOrf-115 Bacmid_dCC_AAV2wt 112760 113374 - 614 614 1 420.71902996604 498.564141173587 443.568604964795 675.662789408155 401.635167443963 643.254143320732 269.222356027909 Bacmid_dCC_Rep2 114243 114857 - 614 614 1 741.93089584976 473.774989096877 397.880495847702 310.900835558348 509.075475684749 611.94871407477 sopA Bacmid_dCC_AAV2wt 13374 14549 - 1175 1175 1 1563.36406634 1745.0636242952 1009.48476487559 1665.01596505511 701.524194136143 1140.80458900064 422.739190521512 Bacmid_dCC_Rep2 14857 16032 - 1175 1175 1 2276.07947288848 1643.69425061918 1507.23734503502 881.507992413206 1751.54353757801 1440.81526208086 AcOrf-106 Bacmid_dCC_AAV2wt 107451 107636 + 185 185 1 2804.59916072072 1351.17021621367 1542.11287949862 959.906229261059 1534.45469010063 1192.94115208259 1469.97274544866 Bacmid_dCC_Rep2 108934 109119 + 185 185 1 1005.06468847601 1273.85986805001 1395.44461374058 1460.92554427706 1060.96784585693 556.186626531499 Ac-p10 Bacmid_dCC_AAV2wt 130522 130806 + 284 284 1 14809.8720290231 16015.1524900188 17348.4766991689 29932.5239517203 12680.3725859387 24888.1743455298 20369.8865669021 Bacmid_dCC_Rep2 132005 132289 + 284 284 1 25129.8612587234 16907.2378173627 21497.2167442381 16542.5761098478 31427.3716833535 79768.0150646477 Ac-94K Bacmid_dCC_AAV2wt 125553 127964 - 2411 2411 1 3486.26448970552 3893.9171240136 3496.19613796297 4126.23776986165 3310.92475148948 4113.88316636433 1575.52014685971 Bacmid_dCC_Rep2 127036 129447 - 2411 2411 1 5138.78055811913 4434.43231201649 2784.07751380838 1991.2607448726 2484.98066229195 1389.78027217117 AcOrf-92 Bacmid_dCC_AAV2wt 92277 93056 - 779 779 1 1935.78852840721 2108.98035784983 2221.8829853987 2341.88188450237 2302.0721109353 2282.69022087986 2153.21481103003 Bacmid_dCC_Rep2 93760 94539 - 779 779 1 1714.56638715522 1805.67387827131 2131.52392988934 2101.06763976129 2184.2619954202 1766.86235545622 Ac-lef9 Bacmid_dCC_AAV2wt 62762 64312 + 1550 1550 1 910.214659669457 925.542122859405 746.570442031916 1007.53724993502 750.011168513895 1009.90995540135 479.605357690633 Bacmid_dCC_Rep2 64245 65795 + 1550 1550 1 1029.65094832852 871.862053843301 698.233705766229 426.280265445302 686.347044399768 650.005741625187 AcOrf-34 Bacmid_dCC_AAV2wt 41872 42519 - 647 647 1 1542.4419206121 1637.77520159627 1331.40380097785 2038.92645738383 1303.78231728997 1951.56068320907 1015.06920645753 Bacmid_dCC_Rep2 43355 44002 - 647 647 1 1882.36033425163 1437.04547638828 1536.25003120819 985.464995803283 1697.42585146003 1783.55812683445 X_Protein Bacmid_dCC_AAV2wt 10277 10744 + 467 467 1 2987.96058017647 3052.53433307931 1962.00897501016 2395.01552883172 1248.98812425713 2566.90125854446 1651.45947635712 Ac-pk-1 Bacmid_dCC_AAV2wt 20495 21313 + 818 818 1 1819.2033987945 1820.20884075345 1383.76631496831 1910.97191759906 1083.2484333735 1489.78183042206 769.164827089874 Bacmid_dCC_Rep2 21978 22796 + 818 818 1 2644.33584398752 2106.71583465331 1862.44782269881 1166.82831927155 1816.47778465891 2294.79111775174 Ac-PNK_PNL Bacmid_dCC_AAV2wt 85709 87793 - 2084 2084 1 1903.81624532568 1896.53008838553 2575.00144834592 2758.30407383996 3256.66494080912 3129.23711436347 3687.8856888813 Bacmid_dCC_Rep2 87192 89276 - 2084 2084 1 1717.5079759286 1660.90024482588 1903.45050728038 1873.62373200077 2302.85300086258 3167.8084367938 AcOrf-53 Bacmid_dCC_AAV2wt 58290 58709 + 419 419 1 1570.27930463143 1815.67441112037 1686.77166381547 1759.40775941454 1244.56124973394 2013.32253659022 809.678734690999 Bacmid_dCC_Rep2 59773 60192 + 419 419 1 1434.83578637248 1515.96259841684 1459.93661629029 1028.5338049429 1529.78053210781 1360.87628737147 AcOrf-119 Bacmid_dCC_AAV2wt 114277 115869 + 1592 1592 1 704.523225501265 765.728314442151 756.290069149683 1140.77788093293 797.335638058756 1229.84077723016 521.883041031601 Bacmid_dCC_Rep2 115760 117352 + 1592 1592 1 1078.4032655141 759.811251875287 803.304900010889 840.767194327825 1136.36792636807 1057.92204663493 mRNA_Rep40 Bacmid_dCC_AAV2wt 7221 10799 + 3578 3578 1 2728.68289120369 2604.64025536 1802.38388569336 2552.28506945612 1185.82815279828 2474.14396031229 1116.00796165935 sopC Bacmid_dCC_AAV2wt 11857 12330 + 473 473 1 144.702228300421 137.861838404005 105.519027480887 93.0710154421488 65.6626583122342 104.535156812653 35.7192150884337 Bacmid_dCC_Rep2 13340 13813 + 473 473 1 550.34197529659 467.093173075948 762.466490653877 515.684942418956 737.589580889458 1115.59709732179 Ac-FP Bacmid_dCC_AAV2wt 62091 62735 - 644 644 1 11173.0864476406 7748.87118494804 9175.70920529919 7294.61597417735 10077.5948373871 6959.65848239543 11206.6521464811 Bacmid_dCC_Rep2 63574 64218 - 644 644 1 6135.34247914802 7141.50889001785 8065.85024801401 8761.79308256047 6694.16369575568 7194.89439833618 Ac-ptp Bacmid_dCC_AAV2wt 502 1009 + 507 507 1 3853.98462032817 3161.82636780126 3057.8035404613 2384.13386463079 3254.70370431759 2917.42199114496 3571.24967761046 Bacmid_dCC_Rep2 502 1009 + 507 507 1 2108.7525884938 2658.19316030776 2814.8254491649 2646.38079317849 2812.80916940296 3022.90722564997 Ac-IE-2 Bacmid_dCC_AAV2wt 142540 143766 - 1226 1226 1 1613.58632772575 1972.39322026013 1541.95530980277 1828.84789813822 1632.21461704901 2091.77311075233 1100.14413314726 Bacmid_dCC_Rep2 144023 145249 - 1226 1226 1 1622.77777393007 1443.16614397221 1104.10566000944 1233.57417284932 1244.70489622498 1111.19373819434 AcOrf-58 Bacmid_dCC_AAV2wt 61152 61325 - 173 173 1 11651.9695299848 11988.4238522854 11543.5617280388 5908.78306227754 9053.62426103159 5357.19466642858 10926.2064501528 Bacmid_dCC_Rep2 62635 62808 - 173 173 1 6197.89891226874 7556.06456233602 7794.66381488284 12089.4141766181 5212.03748824318 4533.10854507496 Ac-IAP1 Bacmid_dCC_AAV2wt 36178 37038 + 860 860 1 7776.3444270028 5907.95419993831 5071.29656889315 3947.63078210131 4807.55719098854 4394.10982024017 4007.69593292226 Bacmid_dCC_Rep2 37661 38521 + 860 860 1 4587.1658809989 4971.03909446078 4281.63432586801 4084.74790259537 3593.931204348 3569.00431144815 AcOrf-113 Bacmid_dCC_AAV2wt 110367 110876 + 509 509 1 1730.73182333821 1505.30772571682 1648.79334929059 1221.09878869653 2108.80077782141 1298.38184802659 2854.85538875678 Bacmid_dCC_Rep2 111850 112359 + 509 509 1 1248.10341553545 1566.22275187479 1216.35795151492 1319.5696527773 966.455950808462 1199.76230111183 mTN7 Bacmid_dCC_AAV2wt 6089 6253 + 164 164 1 1292.41518148417 1192.841150581 909.23976209178 418.569482015352 1443.08105395398 1025.81729915939 679.928327213855 AcOrf-73 Bacmid_dCC_AAV2wt 75593 75892 - 299 299 1 70009.6044818435 55340.1164787382 80210.4331698271 24106.2424090447 121298.259759501 33733.1216113257 180838.867516081 Bacmid_dCC_Rep2 77076 77375 - 299 299 1 17764.5463806499 48349.5589863818 62300.7734488284 97338.2261612321 28255.7253213648 23771.8473540828 Ac_gp64 Bacmid_dCC_AAV2wt 119862 121340 - 1478 1478 1 7939.6891709834 8379.03204549224 8407.63338402691 14776.5099218145 7246.61849193146 8967.32515271975 3920.59827618586 Bacmid_dCC_Rep2 121345 122823 - 1478 1478 1 14444.2914772055 9356.35609645039 9244.46489136538 8682.17812245222 12463.8477674038 10827.5951383776 Ac-DNA-pol Bacmid_dCC_AAV2wt 65907 68861 - 2954 2954 1 1944.7844221267 1922.33803869115 1449.08449513653 1534.47342929225 1467.75824593212 1530.74385976731 863.313259543648 Bacmid_dCC_Rep2 67390 70344 - 2954 2954 1 1932.38486736612 1930.25252332619 1037.14418088185 638.821275112187 760.007137442906 619.375816359707 KanR Bacmid_dCC_AAV2wt 4777 5592 - 815 815 1 1722.95594439577 1875.80437058418 1555.9465121083 2221.95750583631 1239.28881429749 1881.47483892526 1036.18296174438 Bacmid_dCC_Rep2 4776 5592 - 816 816 1 3467.32947726799 2373.60799172692 2860.75155351883 1938.8467919815 3580.63808671534 4971.97445657518 Ac-39K_pp31 Bacmid_dCC_AAV2wt 42820 43647 - 827 827 1 49670.5341854108 36965.1477465437 32783.4057344294 26885.6017968348 33802.9967575679 26406.1226016324 23715.8601907986 Bacmid_dCC_Rep2 44303 45130 - 827 827 1 34901.5903681203 44981.7926927225 32819.7870966011 27607.0243531466 20733.2958137151 15934.1359639697 Ac-IAP2 Bacmid_dCC_AAV2wt 74594 75343 + 749 749 1 1435.56152251304 1555.00525405562 1774.49683523179 2176.67307403177 1773.52385422529 2306.49475852166 1287.37277915662 Bacmid_dCC_Rep2 76077 76826 + 749 749 1 1617.7426399847 1457.6601804951 1445.37321446924 1261.44792903784 1832.56130261618 1883.42316449021 AcOrf-13 Bacmid_dCC_AAV2wt 23216 24199 - 983 983 1 7912.86563492363 7479.42547147956 5591.37008133654 7604.91632769182 5131.43521379426 6159.93830669045 3821.6470050981 Bacmid_dCC_Rep2 24699 25682 - 983 983 1 9700.37383166374 7259.61626544968 6042.92490444008 5215.46052627439 6334.56544898794 6748.50618126794 Ac-lef7 Bacmid_dCC_AAV2wt 118131 118811 - 680 680 1 1282.5161681456 1627.55248710264 1531.38607475303 1101.6620305422 1201.68748163556 1645.80630817695 1645.39261604084 Bacmid_dCC_Rep2 119614 120294 - 680 680 1 1089.18958825899 1085.72259089258 926.120425609684 1410.71485047283 880.790802083915 843.835989434469 mRNA_Rep78 Bacmid_dCC_AAV2wt 6635 10799 + 4164 4164 1 2570.55296182803 2417.74518547067 1682.35811506768 2395.04852734938 1130.75386817092 2325.07144277259 1063.24457687526 T3_promoter Bacmid_dCC_AAV2wt 5972 5990 + 18 18 1 2575.85525754137 1811.35137680818 1300.82235935628 953.408264590524 1259.59218270174 669.988200167819 2072.47648505104 Bacmid_dCC_Rep2 5972 5999 + 27 27 1 1032.98315204479 1295.60689704739 1145.93315485424 1499.72142674498 1314.39121685773 1295.70884477153 Ac-lef5 Bacmid_dCC_AAV2wt 99496 100293 + 797 797 1 2842.25935928028 2147.71273661698 2066.55771637285 982.066163984413 2822.53779116132 1212.78792519713 2434.94223220469 Bacmid_dCC_Rep2 100979 101776 + 797 797 1 1185.92168647551 2314.68988923728 1890.0887740001 1553.21570240769 1002.900415403 800.864545024665 Ac-IE-1 Bacmid_dCC_AAV2wt 138881 140629 + 1748 1748 1 5168.5516740075 6165.64112815141 6816.03969241895 8083.81312473078 6876.38778666282 8203.48423877106 7885.76168483653 Bacmid_dCC_Rep2 140364 142112 + 1748 1748 1 5873.4665607398 5826.72011834839 6241.76694474983 5659.07059945701 7838.43715130817 9868.67205915767 AcOrf-84 Bacmid_dCC_AAV2wt 84743 85309 + 566 566 1 2672.07599911535 3225.86958979266 3133.1505255762 2421.67749861348 3332.47155863929 4924.05815381289 2478.04061515301 Bacmid_dCC_Rep2 86226 86792 + 566 566 1 2031.29019121175 3116.25144123376 1987.85743111559 2015.08506190735 1796.6145234502 1357.68660363726 ORF1629 Bacmid_dCC_AAV2wt 18865 20206 - 1341 1341 1 1471.91729002364 1651.96326162297 1126.21533125477 856.871156970766 880.799682047389 753.624311061251 726.102548307931 Bacmid_dCC_Rep2 20348 21689 - 1341 1341 1 1231.72263991023 1405.90052551381 1146.1734931837 1108.13548693972 976.734495376879 636.472850417282 Ac-vp80 Bacmid_dCC_AAV2wt 103142 105217 + 2075 2075 1 4556.20470063703 3815.62258700171 3796.55357715487 3845.43664049365 3753.20634865444 3063.18605116727 2917.14364295 Bacmid_dCC_Rep2 104625 106700 + 2075 2075 1 3727.70016506573 3896.08793641719 4335.3550597082 3908.61992909774 4003.13620224937 3674.03706767445 AcOrf-75 Bacmid_dCC_AAV2wt 76704 77105 - 401 401 1 35722.4415623692 38517.1900001081 44599.9896079335 37551.033218977 58475.8345107225 40809.29872299 52996.7943235734 Bacmid_dCC_Rep2 78187 78588 - 401 401 1 29358.8752714575 33796.8216258666 41622.503320911 51189.8146127052 37071.3541200396 26828.2722103371 AcOrf-110 Bacmid_dCC_AAV2wt 109507 109677 - 170 170 1 883.150374014184 969.60573699732 753.913144493797 930.487452091417 867.809279782425 1319.48264362462 854.697783157238 Bacmid_dCC_Rep2 110990 111160 - 170 170 1 601.560776779025 812.261289944572 839.859464780123 913.065692165327 1069.47433762605 866.533311326012 AcOrf-108 Bacmid_dCC_AAV2wt 107970 108287 - 317 317 1 3398.87525645837 3931.26103231554 3607.66008478954 1405.20164741322 3855.36123334188 1776.63117053965 4089.38183406759 Bacmid_dCC_Rep2 109453 109770 - 317 317 1 1476.15573462552 3176.95803793673 3386.6255963501 5355.81002534502 1852.36347249324 1261.02597209417 Ac-ctx Bacmid_dCC_AAV2wt 2083 2245 - 162 162 1 10180.7612559968 12299.2994721543 12806.6341636041 14757.1018345316 9499.66402631223 19262.1607548248 8956.53585628941 Bacmid_dCC_Rep2 2083 2245 - 162 162 1 10999.357637514 11251.3230533063 11739.8464354078 11210.2192890686 16050.7388981665 13414.3974517523 Ac-lef1 Bacmid_dCC_AAV2wt 24091 24891 - 800 800 1 2994.43173689184 3120.05274655209 2197.44840270995 3521.80722433091 1975.31661747528 2922.99102028215 956.09873061716 Bacmid_dCC_Rep2 25574 26374 - 800 800 1 4264.92918900493 3106.89943403799 2621.85924789542 2060.37621368974 2874.91482744915 2565.28914905199 AcOrf-72 Bacmid_dCC_AAV2wt 75402 75584 + 182 182 1 3032.7966140597 3871.51475592518 4794.00813986018 1520.9891043802 5491.54129089385 2604.11897142151 9793.2683020908 Bacmid_dCC_Rep2 76885 77067 + 182 182 1 1447.31155918363 2164.83998008671 2250.74336510606 6635.73758442815 1835.92565235478 1776.15550675089 Ac-p40 Bacmid_dCC_AAV2wt 100499 101584 - 1085 1085 1 11147.2298360592 11667.7739838824 11929.4528414137 14975.8642357756 8270.4181827806 9021.49917787261 5149.46666775525 Bacmid_dCC_Rep2 101982 103067 - 1085 1085 1 14626.4701980314 11664.4214832987 13251.469347374 11312.4806685328 16596.9730502697 11680.5043919375 Ac-pcna Bacmid_dCC_AAV2wt 53221 53991 - 770 770 1 5015.03248100912 4681.28472707569 3394.58619518142 5489.49975947463 2602.85839511721 4556.0937840503 766.207780116978 Bacmid_dCC_Rep2 54704 55474 - 770 770 1 8540.22174794433 5501.85712186352 2964.26491169236 1484.97462978441 2557.94186813157 1534.06384081506 p5_promoter Bacmid_dCC_AAV2wt 6603 6608 + 5 5 1 1766.30074802837 2535.89192753145 1725.30123451465 3283.04063285085 1055.98687097735 3256.1426528156 973.162871241357 AcOrf-69 Bacmid_dCC_AAV2wt 72854 73642 + 788 788 1 1972.51860185909 1919.3888320239 2083.90490843979 3364.28338962825 1915.5330669416 2844.30396703224 1433.08935935236 Bacmid_dCC_Rep2 74337 75125 + 788 788 1 2929.84434621841 1712.62063181037 2046.23779202181 1373.56646989044 2609.67731343138 2767.14022192128 Ac-p74 Bacmid_dCC_AAV2wt 130818 132755 - 1937 1937 1 712.401889208654 666.749371019222 633.038840748609 899.457910276756 544.204111891817 941.373198542455 359.011857722192 Bacmid_dCC_Rep2 132301 134238 - 1937 1937 1 948.723297618834 668.204073386858 580.028826800417 430.206245986032 711.434277005842 683.927217898666 AcOrf-78 Bacmid_dCC_AAV2wt 78536 78865 - 329 329 1 13998.8729497993 17072.950211192 19740.2030088845 14430.7733813415 26451.593174312 16247.7229636442 33421.0455666817 Bacmid_dCC_Rep2 80019 80348 - 329 329 1 10267.0361920561 15557.231433751 16971.8490853579 27122.9471492149 14556.3679721311 9522.69551073573 Ac-env-prot Bacmid_dCC_AAV2wt 32091 34163 + 2072 2072 1 2342.13866081464 2214.35957406135 1673.08065798735 1692.1516248866 1879.24531589868 1900.63882324634 1193.5570205319 Bacmid_dCC_Rep2 33574 35646 + 2072 2072 1 2060.98086416658 2116.58356982082 1622.04570537796 1437.78450350862 1383.38992418758 1377.80338867111 Ac-lef11 Bacmid_dCC_AAV2wt 43641 43979 - 338 338 1 18179.0494887683 16114.5964203024 13143.9369197492 17530.0064991048 10988.9897233016 16168.321752393 4533.50898720549 Bacmid_dCC_Rep2 45124 45462 - 338 338 1 22554.4842073685 18994.0974385106 13549.6848349028 9653.42665621839 13705.175764433 10529.4383440607 AcOrf-17 Bacmid_dCC_AAV2wt 27316 27810 + 494 494 1 1318.46842274385 1459.34787038392 1034.03320084778 1487.75994817726 800.980753527712 1530.66534961417 410.956655590564 Bacmid_dCC_Rep2 28799 29293 + 494 494 1 2195.61196284824 1617.50709776277 938.827194364708 645.990475748019 1051.06269932282 940.422640639875 AcOrf-56 Bacmid_dCC_AAV2wt 60212 60466 + 254 254 1 9283.50983707823 12643.8031144917 10174.2314082599 4667.8163614889 11061.2056911314 6654.24894709983 8586.48080181023 Bacmid_dCC_Rep2 61695 61949 + 254 254 1 5392.6600772102 10379.8891561211 6841.76232022229 7798.88881422053 3439.23080364954 1828.33580157317 AcOrf-21 Bacmid_dCC_AAV2wt 29883 30842 - 959 959 1 996.882460761579 1065.27859908218 645.092521768475 892.418145293375 621.492610380156 1151.27586554385 377.014639174289 Bacmid_dCC_Rep2 31366 32325 - 959 959 1 1027.59742132506 827.450604299462 556.200284852514 454.741987805662 576.436510641664 594.94280100279 AcOrf-146 Bacmid_dCC_AAV2wt 138210 138815 - 605 605 1 934.241717965418 993.9977803311 868.761483495276 1133.40133042447 733.081794728079 1281.72618656898 548.688707935898 Bacmid_dCC_Rep2 139693 140298 - 605 605 1 1377.88000611594 1028.59578446755 802.804306781411 656.548648213742 1153.32189011806 1061.25924242639 AcOrf-76 Bacmid_dCC_AAV2wt 77121 77375 - 254 254 1 40941.3214725079 34615.3526890823 41812.8403797729 32101.8862167091 45517.7295879248 40789.6201958863 38265.6069941853 Bacmid_dCC_Rep2 78604 78858 - 254 254 1 25401.6250695739 36742.7780254035 40556.9823889586 40873.3132938667 33988.1984170666 21692.2455571434 Ac-lef3 Bacmid_dCC_AAV2wt 71299 72456 - 1157 1157 1 17893.9089393496 15345.6060462176 13975.0678154399 11950.5826132158 12849.1198246484 12295.8759255864 3342.82334108464 Bacmid_dCC_Rep2 72782 73939 - 1157 1157 1 15272.4371641125 16571.7216075145 9581.34321384235 6626.80956894958 6268.36413385413 1857.9413458094 Ac-v-ubi Bacmid_dCC_AAV2wt 42540 42773 + 233 233 1 14318.028059393 18300.0907339333 14928.4571870558 7871.3557116147 13811.0072837621 10268.9350233447 11687.1199135072 Bacmid_dCC_Rep2 44023 44256 + 233 233 1 9496.35155227442 10801.796919612 9468.2419534329 20673.811586892 8591.53619732184 6404.04341865777 AcOrf-47 Bacmid_dCC_AAV2wt 52516 52782 - 266 266 1 13952.7798751677 13816.661441894 10780.8162532642 6333.82241026762 12265.7475449105 8176.62666994282 5794.6686422496 Bacmid_dCC_Rep2 53999 54265 - 266 266 1 8900.74204694233 15739.5473416929 8298.45695469578 7988.31208939674 3406.20416761919 1553.08842677419 AcOrf-149 Bacmid_dCC_AAV2wt 141850 142173 - 323 323 1 512.664690797708 616.868889934674 564.671788386042 510.520672572501 579.82160189341 696.331389462343 663.253848863756 Bacmid_dCC_Rep2 143333 143656 - 323 323 1 441.336455053192 473.10657589754 377.173431967312 502.449792463213 469.067691941249 490.580711761066 Ac-fgf Bacmid_dCC_AAV2wt 40619 41164 - 545 545 1 4849.22476006871 4636.39480852736 4634.3445349119 3782.75282258836 4956.24275061523 3714.19330122391 6836.19636742304 Bacmid_dCC_Rep2 42102 42647 - 545 545 1 4361.27382175241 4587.61202193526 3402.12046782616 3740.26199600659 2917.72588047 3032.71388594636 Ac-vlf-1 Bacmid_dCC_AAV2wt 77391 78530 - 1139 1139 1 6144.83469188974 4866.31713172347 6215.34738597103 5216.46830540971 8289.52147851869 6593.70740103702 6629.08465956443 Bacmid_dCC_Rep2 78874 80013 - 1139 1139 1 3468.97327179221 4888.11570306942 5718.66169711475 6528.38725172935 5298.95749418993 4133.54743091487 Ac-PE38 Bacmid_dCC_AAV2wt 144209 145174 + 965 965 1 4948.84523055098 4548.08744663857 4078.27497588641 3059.58355727527 6445.67176624913 4410.25807783007 5579.29905196146 Bacmid_dCC_Rep2 145692 146657 + 965 965 1 2482.37091149416 3447.57921461932 2541.27747336702 2760.10907139802 2088.57759712743 2466.8029605069 AcOrf-60 Bacmid_dCC_AAV2wt 61681 61944 - 263 263 1 10804.3206402686 9538.86561551076 9530.8601602466 9359.44611802191 7835.46509610235 8602.34279211669 6252.3761573312 Bacmid_dCC_Rep2 63164 63427 - 263 263 1 8012.49289038544 9443.64418874467 8750.94794787635 8329.93017337361 8460.58133467091 6155.41397068828 AcOrf-124 Bacmid_dCC_AAV2wt 117371 118114 + 743 743 1 13223.4830564035 12889.118074273 13158.6976966179 10638.8512371289 11014.667900504 11604.5022163926 12590.3946989468 Bacmid_dCC_Rep2 118854 119597 + 743 743 1 11094.4893045995 11802.5318812206 12251.0645538752 12237.1040008082 11794.7390493457 9875.8433704924 AcOrf-44 Bacmid_dCC_AAV2wt 49336 49731 + 395 395 1 3923.870649101 4150.05821775039 3280.56826056448 5117.23652151493 2972.9608035483 4263.66921205531 1135.69886415262 Bacmid_dCC_Rep2 50819 51214 + 395 395 1 7123.6610282785 5467.4438422902 3086.67611735146 1986.79189373124 2973.16061154611 2129.5259475964 AcOrf-112 Bacmid_dCC_AAV2wt 110099 110362 + 263 263 1 772.336828985788 881.570251830597 644.293644067801 970.272983438464 816.022062005535 1150.95311344418 706.128952833558 Bacmid_dCC_Rep2 111582 111845 + 263 263 1 801.249289038544 679.046320465703 637.234691625221 612.1893819657 910.30914372548 1073.2851054823 AcOrf-52 Bacmid_dCC_AAV2wt 57917 58288 - 371 371 1 833.16073020206 1069.23437067653 986.550763671258 1405.81070960717 1057.3263184116 1394.51452336817 791.660272239993 Bacmid_dCC_Rep2 59400 59771 - 371 371 1 1227.88563356267 1101.69779272266 902.596102682112 604.623925222178 1228.08234304914 1716.2954838168 AcOrf-116 Bacmid_dCC_AAV2wt 113382 113552 - 170 170 1 181.82507700292 266.375202471791 221.099527952508 267.73459706404 228.370863100638 432.733555167215 182.070504505123 Bacmid_dCC_Rep2 114865 115035 - 170 170 1 309.894945613437 270.753763314857 180.105302830952 160.68443857982 244.084233211951 316.753736619753 AcOrf-152 Bacmid_dCC_AAV2wt 143792 144070 - 278 278 1 675.069980136741 820.972206754787 693.755506684334 778.353322046065 691.552976232522 1064.99203472719 557.176583954135 Bacmid_dCC_Rep2 145275 145553 - 278 278 1 557.36501009611 529.820313824757 442.864004764938 470.493284186954 631.40968223207 824.143205117059 AcOrf-66 Bacmid_dCC_AAV2wt 68870 71296 + 2426 2426 1 2999.65337257909 3100.05396393552 3155.06005404855 2984.58239350077 3189.82698187184 2878.73990144654 2691.53031451349 Bacmid_dCC_Rep2 70353 72779 + 2426 2426 1 2562.44542827929 2600.79859801488 2984.07299462882 2453.84875536074 2765.44777959407 2944.68072668535 Ac-p43 Bacmid_dCC_AAV2wt 44656 45747 - 1091 1091 1 1620.99782214794 1605.47825973741 1326.67690188389 1446.46923974659 1189.95662928919 1595.62817644 804.526897576303 Bacmid_dCC_Rep2 46139 47230 - 1091 1091 1 2002.52920859279 1527.23983450012 992.286468961922 705.774362671398 971.350215072452 733.119567425052 p81_Promoter Bacmid_dCC_AAV2wt 10141 10161 + 20 20 1 1103.93796751773 2083.05408332941 1756.11018513098 2275.74407504434 1087.04530835904 2110.46283052863 1182.66321157804 Ac-HE65 Bacmid_dCC_AAV2wt 105245 106906 - 1661 1661 1 3999.69818694864 4238.84575656436 3193.29857803004 2736.16667050169 2834.71349010459 2986.63072275893 1856.70088577113 Bacmid_dCC_Rep2 106728 108389 - 1661 1661 1 4330.32010095597 4678.74239474635 2572.52852015951 2138.52510490397 2036.1589645374 1550.33534119952 Ac-35K_p35 Bacmid_dCC_AAV2wt 128175 129074 + 899 899 1 8573.63168988742 9826.43010533203 8258.44373695655 9393.63279467234 6728.52198493584 8965.69415403661 3683.63977077687 Bacmid_dCC_Rep2 129658 130557 + 899 899 1 11265.1466325329 9314.17039575151 6096.33411028461 5315.99173775416 5914.96291482532 5019.97097479337 AcOrf-59 Bacmid_dCC_AAV2wt 61460 61669 - 209 209 1 8651.91574542604 7522.74160320335 7049.20583001458 9346.45539017347 6025.93127190143 6439.5803660149 4152.49787097339 Bacmid_dCC_Rep2 62943 63152 - 209 209 1 9089.26323737019 7285.21944199728 7603.9724101789 5820.00574186236 7331.51650003701 7471.75082074346 ccdB Bacmid_dCC_AAV2wt 17539 17844 - 305 305 1 4118.95543290222 4062.17816962884 2620.27599668092 4239.57482617774 1848.23160156595 2991.22272842137 1018.36442537005 Bacmid_dCC_Rep2 19022 19327 - 305 305 1 6583.99753303302 4237.60709691739 3443.78743494158 2366.53933803459 4035.76115798009 3935.85618228575 Ac-p15 Bacmid_dCC_AAV2wt 87934 88314 + 380 380 1 3335.05470186935 3317.63304804867 3588.43198494448 2224.69200778709 4259.09255778868 2405.61026397098 3009.47772425918 Bacmid_dCC_Rep2 89417 89797 + 380 380 1 2128.48896855545 2785.91372252919 2047.41313506277 1942.59029167287 1371.41025284409 1195.02063423356 p40_promoter Bacmid_dCC_AAV2wt 8171 8175 + 4 4 1 96042.6031740425 76076.7578259436 49140.2762330512 24995.877545569 33387.8201853133 39043.5623647796 38047.9650353392 Ac-IE-0 Bacmid_dCC_AAV2wt 134515 135300 + 785 785 1 3917.92506688458 4314.9389485749 4174.31845548176 5588.96320821164 3746.79492999457 5248.69609499622 3798.64105897502 Bacmid_dCC_Rep2 135998 136783 + 785 785 1 5668.90626625345 4406.97450270904 4404.13314367409 3926.0223337082 5758.15407893892 6601.41567706547 AcOrf-19 Bacmid_dCC_AAV2wt 29039 29365 + 326 326 1 5323.28369612844 6100.80923845209 5008.81712474126 2790.03522828025 4461.55405700734 3281.29803799981 8477.86059609035 Bacmid_dCC_Rep2 30522 30848 + 326 326 1 3441.1647334989 4845.66183031964 3974.29654358 5997.57131484431 3287.59079210366 3270.95174896718 Ac-lef8 Bacmid_dCC_AAV2wt 54101 56731 - 2630 2630 1 1406.99622323933 1319.60047070892 1222.28361494608 1346.75024923462 1418.8864073801 1408.65655956197 1032.62365715318 Bacmid_dCC_Rep2 55584 58214 - 2630 2630 1 1379.79840803549 1299.28862967458 1102.90619704365 991.233586128894 974.66395206183 827.916220188867 Ac-bro Bacmid_dCC_AAV2wt 1040 2027 - 987 987 1 14779.5707221675 15279.9509253343 14720.2481577004 18111.6071386757 15539.2882956683 13623.1612846889 14060.7683398695 Bacmid_dCC_Rep2 1040 2027 - 987 987 1 16113.2812653309 13451.2225262324 13115.4270036248 15045.0777172396 14776.5292692452 15806.8718245695 AcOrf-68 Bacmid_dCC_AAV2wt 72298 72876 + 578 578 1 1447.72487781737 1538.70852251352 1753.65826172553 1746.60033668103 1649.10630319026 2210.61331581323 1226.97654397429 Bacmid_dCC_Rep2 73781 74359 + 578 578 1 1538.75171956845 1312.35941747907 1486.00814874454 1182.05922636919 1780.09573331239 1703.93097546576 AcOrf-26 Bacmid_dCC_AAV2wt 35787 36176 + 389 389 1 2917.347636525 3068.58755094239 2539.16441326385 4075.98816593132 2346.54877801485 4010.11189318954 1878.71024164597 Bacmid_dCC_Rep2 37270 37659 + 389 389 1 4620.54160554739 3838.43921318451 3209.68070189171 1972.82488086688 3292.70984608275 4228.63878540136 Ac-p47 Bacmid_dCC_AAV2wt 45755 46960 - 1205 1205 1 1311.89972571402 1375.42448944356 1005.82914294319 1442.1353515484 1013.45872020575 1515.7301514336 536.495852137784 Bacmid_dCC_Rep2 47238 48443 - 1205 1205 1 1964.81110745781 1431.64703596427 948.961034771932 553.127843343644 862.46382885151 792.558250046301 AcOrf-57 Bacmid_dCC_AAV2wt 60651 61136 + 485 485 1 605.458761566425 582.620236664074 567.901069092819 512.302029399875 459.792949279405 607.962488440942 380.403012383864 Bacmid_dCC_Rep2 62134 62619 + 485 485 1 460.050228539535 516.274392399134 434.598102414438 320.706260918073 410.890577070037 408.042209272199 Ac-ME53 Bacmid_dCC_AAV2wt 132888 134237 - 1349 1349 1 2582.67474090879 3049.35431929679 2304.84751386237 2438.66267104242 2349.98866089605 2776.70128205948 1220.66173094612 Bacmid_dCC_Rep2 134371 135720 - 1349 1349 1 2765.85259094572 2714.60252007866 1955.98111214616 1857.69792742095 1961.51359842078 1529.56132410303 AcOrf-63 Bacmid_dCC_AAV2wt 64373 64840 + 467 467 1 2562.45986464501 3285.25613738015 2830.20124505501 2187.30904534398 2862.43071714732 2860.00316281488 2599.03717099316 Bacmid_dCC_Rep2 65856 66323 + 467 467 1 2315.91725950941 2365.47185080218 2070.40920644169 2288.11887913448 1785.82703874995 1283.42743772164 AcOrf-29 Bacmid_dCC_AAV2wt 37624 37839 - 215 215 1 3399.10202091506 4389.36775496308 3287.24338204037 1197.30340204391 3579.66548054976 1705.19787503177 3045.22025083536 Bacmid_dCC_Rep2 39107 39322 - 215 215 1 1729.646208075 2680.33632483415 1490.04622141367 2479.77194050159 745.323305759504 598.223987839113 Ac-alk-exo Bacmid_dCC_AAV2wt 124243 125502 + 1259 1259 1 13210.4284500573 13682.2490813708 14565.6104732754 18699.2739634107 11907.5433993379 12881.17504302 11045.3470575928 Bacmid_dCC_Rep2 125726 126985 + 1259 1259 1 19036.7554358564 15147.2429442605 16217.0817176367 14168.053635223 17735.8250583525 15587.6897820642 AcOrf-96 Bacmid_dCC_AAV2wt 97924 98445 + 521 521 1 1652.72862699391 1303.75578944927 1366.00145726928 1131.39159830404 1674.53264117386 1261.53248438509 1746.72254533697 Bacmid_dCC_Rep2 99407 99928 + 521 521 1 951.692731250478 1293.3818927793 1116.58373923987 944.984874872489 1036.93881426781 874.899711658139 AcOrf-154 Bacmid_dCC_AAV2wt 145274 145519 + 245 245 1 1252.63165293849 1508.22726885253 1212.23789363857 1854.70477310405 1229.66058205046 1412.71797635386 1043.7778641659 Bacmid_dCC_Rep2 146757 147002 + 245 245 1 1517.85279484132 961.894186078579 1081.32824995047 986.405696424688 1597.82100892614 2367.27405865281 AcOrf-85 Bacmid_dCC_AAV2wt 85512 85673 + 161 161 1 2002.1732081688 2351.38160094975 2606.32240617675 1153.97673289083 2882.06866138137 2764.01343199668 2013.99044867841 Bacmid_dCC_Rep2 86995 87156 + 161 161 1 981.654796663682 1772.51221449602 1117.01791608657 2069.93494170525 1171.6482051082 792.479578424385 AcOrf-93 Bacmid_dCC_AAV2wt 93055 93540 + 485 485 1 7524.98746518271 8892.42809934078 9218.54621328299 12667.5522825182 7890.76423540505 12039.8951698611 6028.76070835174 Bacmid_dCC_Rep2 94538 95023 + 485 485 1 10146.6633738997 8715.92650697362 10787.2033585529 8591.4821881482 13485.0910211561 10362.9991935438 sopB Bacmid_dCC_AAV2wt 12403 13374 - 971 971 1 1211.94425682173 1320.73818205993 807.188160329055 1261.7621756252 540.563946190017 947.64345428474 376.670489984425 Bacmid_dCC_Rep2 13886 14857 - 971 971 1 1784.05020183225 1190.75887833138 1121.22360240341 647.702258085905 1357.63503151043 1094.11532441141 AcOrf-54 Bacmid_dCC_AAV2wt 58800 59897 + 1097 1097 1 2441.34321713584 2569.24589089656 2200.71957182849 3194.07450316309 1960.90006659583 2656.56123452139 947.239460410154 Bacmid_dCC_Rep2 60283 61380 + 1097 1097 1 3404.0420188167 2809.52072795413 2287.19822512712 1483.51138918543 2226.71383793535 1607.82467178236 mRNA_VP1 Bacmid_dCC_AAV2wt 8200 10799 + 2599 2599 1 2781.29504090269 2765.46451064827 1907.09656604681 2706.39267252133 1212.70112562277 2664.61447904373 1180.72601794834 AcOrf-102 Bacmid_dCC_AAV2wt 101604 101972 - 368 368 1 9407.47137536848 10095.3306354173 9495.51950789265 14910.746550139 7126.56101225444 9500.35985357531 4650.95162987972 Bacmid_dCC_Rep2 103087 103455 - 368 368 1 15873.6949043839 11076.7718952659 12286.5715068828 10153.6846052585 15656.0643615829 12084.0486926125 AcOrf-132 Bacmid_dCC_AAV2wt 123556 124215 + 659 659 1 20185.8156427749 18237.2024053449 19788.7900104423 15778.884763212 20261.9778439071 15642.9536313538 21351.2114439168 Bacmid_dCC_Rep2 125039 125698 + 659 659 1 16110.7751695241 20204.8866021134 21699.804947266 22135.4396102476 18333.7552800702 13346.3620391006 Ac-p24 Bacmid_dCC_AAV2wt 121583 122179 + 596 596 1 6493.97066127041 4941.70694411091 5223.04760113136 4241.51222700529 5231.99180053919 4825.93849550411 5879.52568041654 Bacmid_dCC_Rep2 123066 123662 + 596 596 1 4445.64057885048 5372.00906367593 5186.44106511448 5439.5456925947 5042.0508506658 4413.87591564246 p19 Bacmid_dCC_AAV2wt 7191 7196 + 5 5 1 32234.9886515177 14490.8110144654 16143.8901229585 9550.66365920247 14845.9330684463 9286.03645432597 15759.8320537142 Bacmid_dCC_Rep2 7944 7949 - 5 5 1 21692.6461929406 27616.8838581154 39964.4187755417 53861.4238119555 36252.9319012698 59198.650572591 AcOrf-122 Bacmid_dCC_AAV2wt 116291 116479 - 188 188 1 8349.99888196921 14009.0686270165 10317.7209085337 4560.21964113349 8724.44722407915 6809.28964925878 4535.81896768744 Bacmid_dCC_Rep2 117774 117962 - 188 188 1 5340.74267972093 10508.1263758007 5803.00092464005 8781.23362749503 3319.42940617401 1287.09375936746 Ac-odv-e25 Bacmid_dCC_AAV2wt 93549 94235 + 686 686 1 18618.8954579885 18224.412831968 19501.2573420177 27439.8850667775 15898.2074148387 22659.5673920023 10404.2838068455 Bacmid_dCC_Rep2 95032 95718 + 686 686 1 22243.771314877 17858.3814569388 21506.7619473335 18869.4125409812 26877.4727943515 22356.5606086191 Ac-49K Bacmid_dCC_AAV2wt 135315 136748 + 1433 1433 1 9919.26397052219 10469.9396050957 10628.5504722194 12320.5144094584 8194.83264062511 11685.2861736178 7174.5955419715 Bacmid_dCC_Rep2 136798 138231 + 1433 1433 1 12514.7386620025 11360.2459675951 11819.8346820894 9524.22529245828 13975.2051696518 12815.3827587172 Ac-egt Bacmid_dCC_AAV2wt 25004 26524 + 1520 1520 1 3237.73385473292 3485.65972181837 2577.00656668459 3162.77374363906 2291.37708419892 2928.86223266783 984.189204943288 Bacmid_dCC_Rep2 26487 28007 + 1520 1520 1 5154.04225336032 4572.53230545552 2363.98188098745 1996.08129556852 1943.60944948647 940.153601309312 Ac-PE_pp34 Bacmid_dCC_AAV2wt 122586 123344 + 758 758 1 12425.8558560175 13506.2770207386 13168.9973610711 17943.9157160704 9639.99810394387 14902.1108949464 7470.61559174874 Bacmid_dCC_Rep2 124069 124827 + 758 758 1 19648.4842825617 15659.2832219235 16651.274237039 12938.7010463824 19881.7344471183 15238.9326772366 mRNA_Rep52 Bacmid_dCC_AAV2wt 7221 10799 + 3578 3578 1 2728.68289120369 2604.64025536 1802.38388569336 2552.28506945612 1185.82815279828 2474.14396031229 1116.00796165935 AcOrf-150 Bacmid_dCC_AAV2wt 142139 142438 + 299 299 1 7140.52183672003 5640.02719668366 7835.15921359854 2026.32182568782 11270.3694177693 3803.47147479885 20536.4126906795 Bacmid_dCC_Rep2 143622 143921 + 299 299 1 1782.67326573616 4242.59375211629 5086.63534906089 8444.80022690061 2813.88604887057 2747.29531271398 Ac-p26 Bacmid_dCC_AAV2wt 129727 130449 + 722 722 1 5379.02184172767 4691.4502418716 4752.77135685204 5729.40609057073 4124.92182898885 4696.13474319845 2035.65963794216 Bacmid_dCC_Rep2 131210 131932 + 722 722 1 6348.1249939373 4549.26323202936 3548.80181915777 2423.6198561416 3300.44390755039 3215.09765165078 AcOrf-120 Bacmid_dCC_AAV2wt 115874 116122 + 248 248 1 3204.98119601922 3206.38409039835 3013.81105625903 1808.1996154173 3768.3402452216 2963.88731614562 3235.70114614692 Bacmid_dCC_Rep2 117357 117605 + 248 248 1 2186.75868880449 2293.98309466604 2634.23116733946 3516.91585730347 2357.83193659274 1683.09997352734 AcOrf-55 Bacmid_dCC_AAV2wt 59989 60210 + 221 221 1 9500.8597928449 7679.80199126364 6139.48500064845 6597.14253043044 6997.28324540356 5568.78427551252 2702.00701680764 Bacmid_dCC_Rep2 61472 61693 + 221 221 1 7417.84734070173 9213.95883773022 5897.53720363052 3449.26233765911 3945.36964007577 2248.00483828374 AcOrf-43 Bacmid_dCC_AAV2wt 49122 49355 + 233 233 1 2691.14491652391 3016.32761459903 2779.41691826318 3749.94204161953 1795.52425549923 3633.46390442942 863.757460227934 Bacmid_dCC_Rep2 50605 50838 + 233 233 1 5599.38936065481 3856.09136559666 2268.50501148721 1725.46122457815 2554.14549436269 1884.19160461601 Ac-odv-e18 Bacmid_dCC_AAV2wt 136836 137024 + 188 188 1 47234.4521846416 45900.4146761392 47376.9554424568 46276.9025375253 36396.1932955288 43444.1018837542 33334.5668498646 Bacmid_dCC_Rep2 138319 138507 + 188 188 1 48511.7460074652 45303.4413927809 49739.5181174317 44808.7360477958 54577.4600439441 49273.5248757989 Ac-lef6 Bacmid_dCC_AAV2wt 37043 37564 + 521 521 1 7229.62830167082 7659.13067775129 6141.684474112 6277.07515869188 5034.92441700051 5705.83041102613 3546.10878838721 Bacmid_dCC_Rep2 38526 39047 + 521 521 1 9195.73101570775 7216.08148922223 4470.66519860752 4736.64416066961 4214.29958724407 3308.68769811423 AcOrf-109 Bacmid_dCC_AAV2wt 108299 109471 - 1172 1172 1 3545.41169772759 3160.59177949892 2924.74730850957 3502.17315414841 2549.60090485673 2936.22900385833 1922.4764248665 Bacmid_dCC_Rep2 109782 110954 - 1172 1172 1 3781.1414012561 3756.08471585632 3731.67705317696 3152.54093916755 3835.82077381697 2961.43673188089 Ac-pkip Bacmid_dCC_AAV2wt 34212 34721 - 509 509 1 5040.37688902005 4761.46982744469 4289.04173020306 2977.25286895878 4082.75057997773 3784.97263179286 4523.52911798639 Bacmid_dCC_Rep2 35695 36204 - 509 509 1 3366.83506727369 4459.93684309841 3896.65113671151 4972.69405993972 3229.74347156968 2928.48467319968 Ac-odv-e56 Bacmid_dCC_AAV2wt 140691 141821 - 1130 1130 1 3411.46140050612 3297.30069211896 3236.8483337797 3314.73531313581 3161.63898408445 3414.62747220043 2329.32322450273 Bacmid_dCC_Rep2 142174 143304 - 1130 1130 1 2909.72156898988 3188.56883246796 3107.99508562003 3316.92496841847 3500.05649180081 3198.07720422741 ITR2 Bacmid_dCC_AAV2wt 10884 11027 + 143 143 1 61.7587674135793 50.6671713792498 47.3983855635893 46.960212485152 13.0315121881203 42.1670895210515 12.2874099904212 Ac-vp39 Bacmid_dCC_AAV2wt 89112 90155 - 1043 1043 1 12561.3957799621 13919.4451439286 17094.0936928782 22028.1066780143 16403.2025232044 22904.3463689586 14874.7639038788 Bacmid_dCC_Rep2 90595 91638 - 1043 1043 1 14835.143465464 12868.461701864 19161.7973331435 17857.0788837842 24878.3750756585 27262.2811630041 AcOrf-114 Bacmid_dCC_AAV2wt 111464 112738 - 1274 1274 1 2448.76663752363 2674.37357910219 2387.33093001915 3042.56388034468 2114.36285252252 2677.48110165967 1643.15656612879 Bacmid_dCC_Rep2 112947 114221 - 1274 1274 1 3446.79072161884 2835.39121557418 2612.75457736489 1781.90718073445 2636.67893933539 2850.59834531744 AcOrf-97 Bacmid_dCC_AAV2wt 98417 98587 + 170 170 1 2792.31368254485 3324.36252684795 2874.2938633826 1321.11661829961 2705.73798601636 1929.56601648332 2618.95302113483 Bacmid_dCC_Rep2 99900 100070 + 170 170 1 1312.49624024515 2350.14266557296 1541.32222317436 2673.03289590429 1295.89458027661 943.199820826335 AcOrf-12 Bacmid_dCC_AAV2wt 22536 23189 + 653 653 1 1027.86260987868 1334.24197893528 1051.18441000291 834.129076284672 1308.44963609526 1112.71394040122 1298.62681941643 Bacmid_dCC_Rep2 24019 24672 + 653 653 1 669.145288384297 927.611514989279 829.178278206172 800.223268394446 691.460513163299 997.430856048564 AcOrf-11 Bacmid_dCC_AAV2wt 21477 22499 - 1022 1022 1 1253.00199835672 1368.26150968289 827.802136912432 827.184895263301 793.479256395149 1044.90625464529 598.440148995317 Bacmid_dCC_Rep2 22960 23982 - 1022 1022 1 1027.92941842422 888.135925769792 510.561154579904 498.090314501828 530.218254308971 522.35919626977 AcOrf-70 Bacmid_dCC_AAV2wt 73688 74560 + 872 872 1 7492.0927657912 7883.11751718698 8140.34658486598 4057.594526944 10172.7067667243 6755.97046338949 9120.92189018324 Bacmid_dCC_Rep2 75171 76043 + 872 872 1 3610.70257733087 6306.69970062621 5141.5454793075 7735.3341315409 3543.53425333046 2500.97417044381 Ac-lef4 Bacmid_dCC_AAV2wt 90174 91568 + 1394 1394 1 793.504909220061 740.653001994737 718.728173632102 883.706157042643 1025.1066742693 1048.09416650356 369.221685565827 Bacmid_dCC_Rep2 91657 93051 + 1394 1394 1 849.209965741269 645.846781760806 565.979180141425 507.642946560635 545.977890079364 307.182725003699 AcOrf-38 Bacmid_dCC_AAV2wt 43942 44592 - 650 650 1 2316.57136568336 2717.02706521227 2124.39564096007 2773.36579334533 1666.64353211267 2842.39917043504 822.821684081635 Bacmid_dCC_Rep2 45425 46075 - 650 650 1 3914.2115438251 3144.07600846237 1752.28605400452 1134.18492954494 1731.16989454395 1260.32602631815 Ac-TLP Bacmid_dCC_AAV2wt 80954 81496 - 542 542 1 30881.7480876454 26231.1751966188 31527.447176832 34602.1579615507 35191.1578687112 35510.7343635442 13452.0614912291 Bacmid_dCC_Rep2 82437 82979 - 542 542 1 32424.6169109557 34189.9060309879 28033.0108667921 22706.3120863992 24327.7472958703 11885.3935154379 AcOrf-107 Bacmid_dCC_AAV2wt 107637 107969 + 332 332 1 6823.13466670597 4577.48134078935 4220.45504226153 1979.98274749562 4658.76560725302 2257.5777094209 3864.72353442696 Bacmid_dCC_Rep2 109120 109452 + 332 332 1 2044.18653883562 4397.62829306939 3759.76957631348 4224.25837326706 1984.10338668901 1039.27603477688 Ac-lef10 Bacmid_dCC_AAV2wt 58706 58942 + 236 236 1 2123.67727649597 3070.0870793359 2297.61665613331 3044.65343743776 1864.82227838348 3273.00591514186 841.323127267864 Bacmid_dCC_Rep2 60189 60425 + 236 236 1 3007.0314637914 2730.4828673278 2302.48804181121 1826.08332318253 2431.45238336191 1359.57385575198 Ac-pk-2 Bacmid_dCC_AAV2wt 116542 117189 - 647 647 1 2146.451256781 2497.25723046816 2139.96018655024 2405.65644236577 1643.16895142989 2991.64746566434 780.051125110602 Bacmid_dCC_Rep2 118025 118672 - 647 647 1 2605.60819804806 2697.66160716058 1969.12982275161 1338.62306637593 2021.04644009285 1217.66473988371 AcOrf-145 Bacmid_dCC_AAV2wt 137982 138215 + 233 233 1 4074.62082431437 4306.81829507181 5712.2174533287 8034.67513443502 5430.56111128721 8441.85132211452 5795.70234058918 Bacmid_dCC_Rep2 139465 139698 + 233 233 1 4561.97280452399 4029.93155011127 6171.99351296093 5063.28389722332 9401.1300214524 11795.3338498344 Ac-gp37 Bacmid_dCC_AAV2wt 64861 65769 - 908 908 1 4328.2149387259 5146.79135701003 4397.40088092154 6011.07384594112 3559.40638098935 4867.08058053629 2673.01237134133 Bacmid_dCC_Rep2 66344 67252 - 908 908 1 5563.09208535135 4501.4304085915 5024.30321663878 3746.00021570222 6084.22608014102 6085.84858359771 ORF603 Bacmid_dCC_AAV2wt 3758 4364 - 606 606 1 5239.15114617325 4638.97250298069 5003.6582832665 1913.38326712054 5309.66025205075 2727.38265840593 7440.12813047057 Bacmid_dCC_Rep2 3758 4364 - 606 606 1 2173.35564167839 3803.77762270193 4405.74423954791 6317.60302574716 3266.40732752926 3508.48826240771 AcOrf-117 Bacmid_dCC_AAV2wt 113488 113775 + 287 287 1 13639.5959331633 11436.1278563638 12443.8102977189 5701.38431092961 16320.2889948857 9036.43666909272 12900.1535854836 Bacmid_dCC_Rep2 114971 115258 + 287 287 1 5377.27118172445 11277.6961260318 10105.6480993902 14060.7281898731 6532.71106108898 3940.70498470046 Ac-gp41 Bacmid_dCC_AAV2wt 79185 80414 - 1229 1229 1 6866.15282644876 7260.14392364288 9150.4338112074 12510.2328723509 7434.06063838145 9927.00091830426 4958.85474462897 Bacmid_dCC_Rep2 80668 81897 - 1229 1229 1 9448.13963558624 6631.94710278693 7824.73508113477 8230.33800536993 12134.7917465117 8082.81571435554 AcOrf-5 Bacmid_dCC_AAV2wt 2778 3108 + 330 330 1 4489.3477345721 5219.98533134721 4483.16911695852 6505.032989471 3960.42134854964 5496.339562104 3308.99951042042 Bacmid_dCC_Rep2 2778 3108 + 330 330 1 5390.29390248827 3927.7345931542 4295.29603555309 3538.95302908524 5198.37130493746 6449.09629556739 Ac-38K Bacmid_dCC_AAV2wt 98599 99561 - 962 962 1 2912.46835920998 3408.05196675967 4123.65954403227 4760.75019004879 4128.96419619951 4684.13683770135 4692.71770320243 Bacmid_dCC_Rep2 100082 101044 - 962 962 1 2631.85208488751 2851.63942817686 4032.35651853012 4768.08522214088 5665.23004030375 6565.49790229331 Ac-p48 Bacmid_dCC_AAV2wt 101953 103116 - 1163 1163 1 8087.31855825543 8552.13276874782 8049.00391682428 10889.3630620999 6174.299847503 8983.6603524308 4352.94441367453 Bacmid_dCC_Rep2 103436 104599 - 1163 1163 1 10234.7935176372 9413.01183263712 11048.6049161101 8848.8353854541 12738.9364026213 9334.23513764537 Ac-odv-e66 Bacmid_dCC_AAV2wt 50296 52410 + 2114 2114 1 1572.87661218704 1785.64629577495 1531.12031776346 1596.76569869885 1687.20480081027 1941.60298518832 1385.18169908573 Bacmid_dCC_Rep2 51779 53893 + 2114 2114 1 1357.43954417239 1428.30935122388 1348.32804212657 1696.535794277 1423.3132224349 1349.94308234033 ITR Bacmid_dCC_AAV2wt 6349 6493 + 144 144 1 153.324717710796 176.103606078573 102.696502054443 160.628566316882 112.155468322758 385.243215096496 76.9669709122216 Ac-p6.9 Bacmid_dCC_AAV2wt 100290 100457 - 167 167 1 80594.0820357854 97953.9777482316 90655.7984003956 108401.104837 65516.5647953331 111210.017417077 43565.711105439 Bacmid_dCC_Rep2 101773 101940 - 167 167 1 95455.0658823665 100986.289876382 110160.75855354 137653.643838223 135498.961935834 86120.2536457273 Ac-gp16 Bacmid_dCC_AAV2wt 122207 122527 + 320 320 1 56714.8130812234 35400.5984704949 39221.7196940055 21624.2321229111 46896.2992940107 18040.6885173938 37572.7878521159 Bacmid_dCC_Rep2 123690 124010 + 320 320 1 25818.1226564195 36442.7796577715 41649.410524823 42820.3943260396 25162.7560090327 18624.9810073855 AcOrf-91 Bacmid_dCC_AAV2wt 91565 92239 - 674 674 1 189.995258504535 193.497476454286 315.403203639018 322.148915618963 332.703142278603 443.742926639339 300.804547243249 Bacmid_dCC_Rep2 93048 93722 - 674 674 1 183.913914310645 169.361701207038 279.73562965076 371.433761583618 435.000188386674 401.247941042117 AcOrf-48 Bacmid_dCC_AAV2wt 52856 53197 - 341 341 1 10961.6831613344 9083.31628839293 6528.60636814143 4715.37760850012 5887.44103329101 7080.26239919282 2074.59044806014 Bacmid_dCC_Rep2 54339 54680 - 341 341 1 7470.19487666408 9211.02714798533 4670.89579010329 3542.5970945545 3130.16649590955 1298.50276586169 Ac-helicase Bacmid_dCC_AAV2wt 94272 97937 - 3665 3665 1 4649.49153249759 4510.83329225873 5133.03176680635 5531.86035444768 5217.73273677446 4921.97279579766 4892.84665818571 Bacmid_dCC_Rep2 95755 99420 - 3665 3665 1 5068.2409386274 4747.24060862558 4597.93953284772 4006.10638220803 4869.70566133815 5433.14915021352 AcOrf-30 Bacmid_dCC_AAV2wt 37893 39284 - 1391 1391 1 1539.64029977311 1625.13768386528 1208.43734408852 1519.11167117077 1229.83373902466 1878.32709144101 711.468422320994 Bacmid_dCC_Rep2 39376 40767 - 1391 1391 1 1904.81796189424 1957.60226341494 1045.19545636969 704.654978674981 869.207791215494 714.935724589493 repE Bacmid_dCC_AAV2wt 15128 15883 - 755 755 1 2193.25424010145 2307.97354237016 1457.61021988797 2099.09039860783 1034.18425930544 1689.16892585357 735.600853188142 Bacmid_dCC_Rep2 16611 17366 - 755 755 1 3591.49771406301 2765.34625122322 2136.1028792225 1384.22726956708 2376.26933351098 2106.04424773071 mRNA_Rep68 Bacmid_dCC_AAV2wt 6635 10799 + 4164 4164 1 2570.55296182803 2417.74518547067 1682.35811506768 2395.04852734938 1130.75386817092 2325.07144277259 1063.24457687526 Ac-lef2 Bacmid_dCC_AAV2wt 3088 3721 + 633 633 1 14890.082727751 12018.4451541775 11912.7942383154 6319.25205827711 13076.9269051614 7176.81199061282 18439.8306998272 Bacmid_dCC_Rep2 3088 3721 + 633 633 1 6193.00325751971 9793.15934178775 8920.865583324 10683.3574756245 6033.35756888649 7194.48928389032 PolyA Bacmid_dCC_AAV2wt 10772 10772 + 0 0 1 6623.62780510638 9056.7568840409 7394.14814791993 8207.60158212712 12423.3749526747 36179.3628090622 12029.3743806223 AcOrf-74 Bacmid_dCC_AAV2wt 75889 76686 - 797 797 1 39445.3518682182 29120.2574542575 42929.1995200282 30366.3470877011 52286.1194330372 34584.5050758647 62855.8680876247 Bacmid_dCC_Rep2 77372 78169 - 797 797 1 19456.8921938474 29277.8240081769 38317.3645229738 40641.6710999678 31725.973694229 29601.8642980181 Ac-IE-01 Bacmid_dCC_AAV2wt 134515 140629 + 6114 6114 1 13819.2666473564 15356.1949483314 15761.1415699631 18932.0106021495 13609.579681657 15788.8735455937 15368.6860512331 Bacmid_dCC_Rep2 135998 142112 + 6114 6114 1 18010.299480671 15259.6006174478 16912.9338445888 14294.0818713483 19497.143711578 22379.727678365 AcOrf-118 Bacmid_dCC_AAV2wt 113809 114282 - 473 473 1 3211.45590550612 4128.19616109771 3655.3875445848 2964.07522060674 3457.13896013913 3464.9580026438 2052.56897584175 Bacmid_dCC_Rep2 115292 115765 - 473 473 1 3747.56678416249 3674.46629486413 2399.82750677655 2967.73626941502 1957.67125068626 903.862061626005 AcOrf-16 Bacmid_dCC_AAV2wt 26670 27347 + 677 677 1 3662.3998154281 2806.65818947087 2183.47629331117 1668.63284481542 2303.00377630824 1919.41228098299 1836.55942322117 Bacmid_dCC_Rep2 28153 28830 + 677 677 1 2632.04717470792 3540.83533070077 1795.70433627178 1619.66116524179 1262.12023334447 1031.47835917949 AcOrf-51 Bacmid_dCC_AAV2wt 56758 57714 + 956 956 1 2762.15441245022 2171.34798935374 2070.25835522305 1255.80362739088 2649.71354900667 1305.63600095465 2573.01706963643 Bacmid_dCC_Rep2 58241 59197 + 956 956 1 1179.93473015995 1858.45836283692 1555.50536703966 1617.93766293864 974.593378054848 1043.29596004678