Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
30285604 |
30285604 |
Not Truncated |
23775297 |
23726628 |
Truncated |
6510307 |
6558976 |
Too short to map |
567326 |
587996 |
Average length of truncated sequence |
52.96 |
52.69 |
|
Read 1 |
Read 2 |
Unique Alignments |
24890399 |
24537026 |
Multiple Alignments |
3534517 |
3814813 |
Failed To Align |
1293362 |
1345769 |
Paired |
20981323 |
20981323 |
Filtering
|
Di-Tag Count |
Valid Pairs |
17844589 |
Invalid Pairs |
3136734 |
Same Circularised |
118604 |
Same Fragment Dangling Ends |
288011 |
Same Fragment Internal |
896900 |
Re-ligation |
479387 |
Contiguous Sequence |
29319 |
Wrong Size |
1324513 |
Total Pairs |
20981323 |
Di-tag length Distribution
De-duplication
Percentage uniques: 94.13
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
17844589 |
16796842 |
Cis-close (< 10Kbp) |
1178905 |
1107828 |
Cis-far (> 10Kbp) |
13240709 |
12485131 |
Trans |
3424975 |
3203883 |