Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
30285604 |
30285604 |
| Not Truncated |
23775297 |
23726628 |
| Truncated |
6510307 |
6558976 |
| Too short to map |
567326 |
587996 |
| Average length of truncated sequence |
52.96 |
52.69 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
24890399 |
24537026 |
| Multiple Alignments |
3534517 |
3814813 |
| Failed To Align |
1293362 |
1345769 |
| Paired |
20981323 |
20981323 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
17844589 |
| Invalid Pairs |
3136734 |
| Same Circularised |
118604 |
| Same Fragment Dangling Ends |
288011 |
| Same Fragment Internal |
896900 |
| Re-ligation |
479387 |
| Contiguous Sequence |
29319 |
| Wrong Size |
1324513 |
| Total Pairs |
20981323 |
Di-tag length Distribution
De-duplication
Percentage uniques: 94.13
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
17844589 |
16796842 |
| Cis-close (< 10Kbp) |
1178905 |
1107828 |
| Cis-far (> 10Kbp) |
13240709 |
12485131 |
| Trans |
3424975 |
3203883 |
