Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
27266908 |
27266908 |
| Not Truncated |
21326747 |
21450216 |
| Truncated |
5940161 |
5816692 |
| Too short to map |
517984 |
532088 |
| Average length of truncated sequence |
52.93 |
52.57 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
22573663 |
21588766 |
| Multiple Alignments |
3159545 |
3660095 |
| Failed To Align |
1015716 |
1485959 |
| Paired |
18631217 |
18631217 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
15829703 |
| Invalid Pairs |
2801514 |
| Same Circularised |
106969 |
| Same Fragment Dangling Ends |
259155 |
| Same Fragment Internal |
804420 |
| Re-ligation |
427962 |
| Contiguous Sequence |
25986 |
| Wrong Size |
1177022 |
| Total Pairs |
18631217 |
Di-tag length Distribution
De-duplication
Percentage uniques: 94.58
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
15829703 |
14971281 |
| Cis-close (< 10Kbp) |
1051008 |
992026 |
| Cis-far (> 10Kbp) |
11736447 |
11118858 |
| Trans |
3042248 |
2860397 |
