Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
31376814 |
31376814 |
| Not Truncated |
24379395 |
24291774 |
| Truncated |
6997419 |
7085040 |
| Too short to map |
602484 |
636999 |
| Average length of truncated sequence |
53.08 |
52.69 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
25849540 |
25386984 |
| Multiple Alignments |
3800182 |
4069471 |
| Failed To Align |
1124608 |
1283360 |
| Paired |
21749845 |
21749845 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
18981822 |
| Invalid Pairs |
2768023 |
| Same Circularised |
119865 |
| Same Fragment Dangling Ends |
242601 |
| Same Fragment Internal |
753646 |
| Re-ligation |
461262 |
| Contiguous Sequence |
29283 |
| Wrong Size |
1161366 |
| Total Pairs |
21749845 |
Di-tag length Distribution
De-duplication
Percentage uniques: 93.80
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
18981822 |
17804389 |
| Cis-close (< 10Kbp) |
1211908 |
1134309 |
| Cis-far (> 10Kbp) |
14099656 |
13247028 |
| Trans |
3670258 |
3423052 |
