Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
26307203 |
26307203 |
| Not Truncated |
20342401 |
20434183 |
| Truncated |
5964802 |
5873020 |
| Too short to map |
516729 |
538285 |
| Average length of truncated sequence |
52.98 |
52.60 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
21805857 |
20788478 |
| Multiple Alignments |
3167711 |
3646892 |
| Failed To Align |
816906 |
1333548 |
| Paired |
17951656 |
17951656 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
15651121 |
| Invalid Pairs |
2300535 |
| Same Circularised |
100968 |
| Same Fragment Dangling Ends |
201191 |
| Same Fragment Internal |
630430 |
| Re-ligation |
383325 |
| Contiguous Sequence |
24400 |
| Wrong Size |
960221 |
| Total Pairs |
17951656 |
Di-tag length Distribution
De-duplication
Percentage uniques: 94.61
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
15651121 |
14807041 |
| Cis-close (< 10Kbp) |
1003610 |
947489 |
| Cis-far (> 10Kbp) |
11614395 |
11004132 |
| Trans |
3033116 |
2855420 |
