Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
35289700 |
35289700 |
| Not Truncated |
27468897 |
27457006 |
| Truncated |
7820803 |
7832694 |
| Too short to map |
722288 |
742893 |
| Average length of truncated sequence |
52.28 |
52.04 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
28655262 |
28177922 |
| Multiple Alignments |
4487119 |
4783242 |
| Failed To Align |
1425031 |
1585643 |
| Paired |
23997573 |
23997573 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
20342101 |
| Invalid Pairs |
3655472 |
| Same Circularised |
134726 |
| Same Fragment Dangling Ends |
405409 |
| Same Fragment Internal |
943574 |
| Re-ligation |
592469 |
| Contiguous Sequence |
33207 |
| Wrong Size |
1546087 |
| Total Pairs |
23997573 |
Di-tag length Distribution
De-duplication
Percentage uniques: 89.95
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
20342101 |
18298636 |
| Cis-close (< 10Kbp) |
1326337 |
1189826 |
| Cis-far (> 10Kbp) |
14633526 |
13202829 |
| Trans |
4382238 |
3905981 |
