Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
30135904 |
30135904 |
| Not Truncated |
23367664 |
23542313 |
| Truncated |
6768240 |
6593591 |
| Too short to map |
627960 |
637591 |
| Average length of truncated sequence |
52.23 |
51.91 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
24639059 |
23512471 |
| Multiple Alignments |
3804272 |
4341757 |
| Failed To Align |
1064613 |
1644085 |
| Paired |
20192717 |
20192717 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
17102584 |
| Invalid Pairs |
3090133 |
| Same Circularised |
114709 |
| Same Fragment Dangling Ends |
343566 |
| Same Fragment Internal |
799487 |
| Re-ligation |
501073 |
| Contiguous Sequence |
28325 |
| Wrong Size |
1302973 |
| Total Pairs |
20192717 |
Di-tag length Distribution
De-duplication
Percentage uniques: 91.05
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
17102584 |
15572649 |
| Cis-close (< 10Kbp) |
1116952 |
1014260 |
| Cis-far (> 10Kbp) |
12293167 |
11225016 |
| Trans |
3692465 |
3333373 |
