Truncating and Mapping
|
Read 1 |
Read 2 |
Total Reads |
30135904 |
30135904 |
Not Truncated |
23367664 |
23542313 |
Truncated |
6768240 |
6593591 |
Too short to map |
627960 |
637591 |
Average length of truncated sequence |
52.23 |
51.91 |
|
Read 1 |
Read 2 |
Unique Alignments |
24639059 |
23512471 |
Multiple Alignments |
3804272 |
4341757 |
Failed To Align |
1064613 |
1644085 |
Paired |
20192717 |
20192717 |
Filtering
|
Di-Tag Count |
Valid Pairs |
17102584 |
Invalid Pairs |
3090133 |
Same Circularised |
114709 |
Same Fragment Dangling Ends |
343566 |
Same Fragment Internal |
799487 |
Re-ligation |
501073 |
Contiguous Sequence |
28325 |
Wrong Size |
1302973 |
Total Pairs |
20192717 |
Di-tag length Distribution
De-duplication
Percentage uniques: 91.05
|
All Di-Tags |
Unique Di-Tags |
Read Pairs |
17102584 |
15572649 |
Cis-close (< 10Kbp) |
1116952 |
1014260 |
Cis-far (> 10Kbp) |
12293167 |
11225016 |
Trans |
3692465 |
3333373 |