Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
34137523 |
34137523 |
| Not Truncated |
27398200 |
27413683 |
| Truncated |
6739323 |
6723840 |
| Too short to map |
601695 |
619203 |
| Average length of truncated sequence |
52.78 |
52.50 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
27971023 |
27290782 |
| Multiple Alignments |
4041951 |
4396986 |
| Failed To Align |
1522854 |
1830552 |
| Paired |
23274004 |
23274004 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
18695031 |
| Invalid Pairs |
4578973 |
| Same Circularised |
123016 |
| Same Fragment Dangling Ends |
425695 |
| Same Fragment Internal |
1240767 |
| Re-ligation |
745153 |
| Contiguous Sequence |
40300 |
| Wrong Size |
2004042 |
| Total Pairs |
23274004 |
Di-tag length Distribution
De-duplication
Percentage uniques: 87.89
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
18695031 |
16431866 |
| Cis-close (< 10Kbp) |
1190497 |
1044888 |
| Cis-far (> 10Kbp) |
13284229 |
11718238 |
| Trans |
4220305 |
3668740 |
