Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
31444784 |
31444784 |
| Not Truncated |
25203933 |
25383229 |
| Truncated |
6240851 |
6061555 |
| Too short to map |
559345 |
570704 |
| Average length of truncated sequence |
52.74 |
52.37 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
25942675 |
24559182 |
| Multiple Alignments |
3702352 |
4338711 |
| Failed To Align |
1240412 |
1976187 |
| Paired |
21126114 |
21126114 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
16945089 |
| Invalid Pairs |
4181025 |
| Same Circularised |
113442 |
| Same Fragment Dangling Ends |
387316 |
| Same Fragment Internal |
1126923 |
| Re-ligation |
679384 |
| Contiguous Sequence |
37120 |
| Wrong Size |
1836840 |
| Total Pairs |
21126114 |
Di-tag length Distribution
De-duplication
Percentage uniques: 88.67
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
16945089 |
15025230 |
| Cis-close (< 10Kbp) |
1079889 |
955693 |
| Cis-far (> 10Kbp) |
12032511 |
10706259 |
| Trans |
3832689 |
3363278 |
