Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
152333771 |
152333771 |
| Not Truncated |
117626287 |
118332309 |
| Truncated |
34707484 |
34001462 |
| Too short to map |
3223590 |
3239758 |
| Average length of truncated sequence |
52.20 |
51.95 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
123276329 |
117796230 |
| Multiple Alignments |
20302304 |
21828305 |
| Failed To Align |
5531548 |
9469478 |
| Paired |
100686388 |
100686388 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
85602107 |
| Invalid Pairs |
15084281 |
| Same Circularised |
563280 |
| Same Fragment Dangling Ends |
1674946 |
| Same Fragment Internal |
4040254 |
| Re-ligation |
2507040 |
| Contiguous Sequence |
140272 |
| Wrong Size |
6158489 |
| Total Pairs |
100686388 |
Di-tag length Distribution
De-duplication
Percentage uniques: 72.38
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
85602107 |
61958269 |
| Cis-close (< 10Kbp) |
5577436 |
4009001 |
| Cis-far (> 10Kbp) |
61560092 |
44950053 |
| Trans |
18464579 |
12999215 |
