Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
153945748 |
153945748 |
| Not Truncated |
118428427 |
118832127 |
| Truncated |
35517321 |
35113621 |
| Too short to map |
3074492 |
3163854 |
| Average length of truncated sequence |
52.99 |
52.62 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
126347423 |
120187459 |
| Multiple Alignments |
19644479 |
21276610 |
| Failed To Align |
4879354 |
9317825 |
| Paired |
103365063 |
103365063 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
90417241 |
| Invalid Pairs |
12947822 |
| Same Circularised |
570739 |
| Same Fragment Dangling Ends |
1136963 |
| Same Fragment Internal |
3679894 |
| Re-ligation |
2219428 |
| Contiguous Sequence |
140198 |
| Wrong Size |
5200600 |
| Total Pairs |
103365063 |
Di-tag length Distribution
De-duplication
Percentage uniques: 78.77
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
90417241 |
71226050 |
| Cis-close (< 10Kbp) |
5771784 |
4511682 |
| Cis-far (> 10Kbp) |
67145577 |
53198754 |
| Trans |
17499880 |
13515614 |
