Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
149134354 |
149134354 |
| Not Truncated |
117183942 |
118049267 |
| Truncated |
31950412 |
31085087 |
| Too short to map |
2791531 |
2787771 |
| Average length of truncated sequence |
52.91 |
52.64 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
121304084 |
113415389 |
| Multiple Alignments |
19043010 |
20968594 |
| Failed To Align |
5995729 |
11962600 |
| Paired |
97461618 |
97461618 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
82944363 |
| Invalid Pairs |
14517255 |
| Same Circularised |
537620 |
| Same Fragment Dangling Ends |
1325457 |
| Same Fragment Internal |
4235388 |
| Re-ligation |
2272620 |
| Contiguous Sequence |
136015 |
| Wrong Size |
6010155 |
| Total Pairs |
97461618 |
Di-tag length Distribution
De-duplication
Percentage uniques: 80.83
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
82944363 |
67047326 |
| Cis-close (< 10Kbp) |
5467977 |
4394341 |
| Cis-far (> 10Kbp) |
61520338 |
50005958 |
| Trans |
15956048 |
12647027 |
