Truncating and Mapping
| |
Read 1 |
Read 2 |
| Total Reads |
96882942 |
96882942 |
| Not Truncated |
78706234 |
79091938 |
| Truncated |
18176708 |
17791004 |
| Too short to map |
1624058 |
1636113 |
| Average length of truncated sequence |
52.79 |
52.48 |
| |
Read 1 |
Read 2 |
| Unique Alignments |
77342084 |
73215550 |
| Multiple Alignments |
12615996 |
13647422 |
| Failed To Align |
5300804 |
8383857 |
| Paired |
62236208 |
62236208 |
Filtering
| |
Di-Tag Count |
| Valid Pairs |
50019687 |
| Invalid Pairs |
12216521 |
| Same Circularised |
327990 |
| Same Fragment Dangling Ends |
1114517 |
| Same Fragment Internal |
3251300 |
| Re-ligation |
2029544 |
| Contiguous Sequence |
109554 |
| Wrong Size |
5383616 |
| Total Pairs |
62236208 |
Di-tag length Distribution
De-duplication
Percentage uniques: 75.99
| |
All Di-Tags |
Unique Di-Tags |
| Read Pairs |
50019687 |
38012344 |
| Cis-close (< 10Kbp) |
3182514 |
2407318 |
| Cis-far (> 10Kbp) |
35485898 |
27169456 |
| Trans |
11351275 |
8435570 |
