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home:services [14.03.2020 13:53]
Teemu Kuulasmaa [Project and user fees]
home:services [19.03.2024 11:35] (current)
Administrator
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 #Services #Services
  
-The UEF Bioinformatics Center provides infrastructure, data analysis and consultancy services and training. The UEF Bioinformatic Center has expertise especially in processing data from different omics methodologies and service coverage includes i.a. experimental design, data analysis, data visualizationworkflow development and training. The BIC offers services particularly for the UEF research community but services are also available for other Finnish research institutions and non-academic customers. The project requests are evaluated together with customer based on available expertise, feasibility and available resources. A detailed report describing the analysis tools and methods used together with analysis results is provided at the end of each project. The data are analyzed using widely used freely available tools and published or in-house developed workflows. The infrastructure services and training are provided free of charge, but the data analysis and consultancy services are charged based on project fees and actual working hours. The data analysis services are available in two different categories: Basic and Advanced+The UEF Bioinformatics Center provides infrastructure, data analysisconsultancy and training services. The Bioinformatic Center has expertise especially in processing data from different omics methodologies and service coverage includes e.g. experimental design, data analysis, data visualization and workflow development. The Bioinformatics Center primarily offers services particularly for the UEF research community but services are also available for other Finnish research institutions and non-academic customers. The project requests are evaluated together with customer based on available expertise, feasibility and available resources. Reports describing the analysis tools and methods used together with analysis results are provided at the end of each project. The data are analyzed using widely used freely available tools and published or in-house developed workflows. The infrastructure services and training are provided free of charge, but the data analysis and consultancy services are charged based on project fees and actual working hours.
  
-Contribution of The UEF Binformatics Center to scientific publication is to be acknowledged in the each article. See more detailed information regarding citing and acknowledgement from [[guides:cite|Acknowledge or cite]].+Contribution of the Bioinformatics Center to scientific publications is to be acknowledged in the each article. See more detailed information regarding citing and acknowledgement from [[guides:cite|Acknowledge or cite]].
  
 ## Basic analysis service ## Basic analysis service
  
-Basic analysis service covers standardized analysis of genomics or transciptomics sequencing data generated by using Illumina sequencing technology, either single-end or paired-end. Also array based genotype data analysis are supported.+Basic analysis service covers standardized but configurable analysis of genomics or transcriptomics sequencing data generated by using Illumina sequencing technology, either single-end or paired-end. Also array based genotype data analyses are supported.
  
 * **Genomics** * **Genomics**
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 ##Advanced analysis service ##Advanced analysis service
  
-Advanced analysis service include the same standard analysis as basic service, but provides also additional and customized analysis. Also singe-cell sequencing data analysis are supported.+Advanced analysis service includes the same standard analysis as basic service, but provides also additional and customized analyses that will be adjusted for each individual project's needs. Also singe-cell sequencing data analyses are supported. 
 + 
 +UEF Bioinformatics Center collaborates with THL Biobank to offer genetic imputation service using a Finnish haplotype reference panel [[https://thl.fi/en/web/thl-biobank/for-researchers/sample-collections/thl-biobank-imputation-reference-panel|SISu v3 of the THL Biobank]]. Interested parties should [[https://link.webropolsurveys.com/Participation/Public/41725caf-746e-4d66-8982-f60ee2f9f689?displayId=Fin2069414|request the service]] from BIC and apply for a usage permission from the THL Biobank [[https://thl.fi/en/research-and-development/thl-biobank/contact-information|admin.biobank (at) thl.fi]]
  
 * **Genomics** * **Genomics**
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   - Phenome-wide association testing (PheWAS)   - Phenome-wide association testing (PheWAS)
   - Customized statistical analysis   - Customized statistical analysis
-  - Advanced genome-wide result browser (PheWeb)+  - Customized genome-wide result browser (PheWeb), example [[http://r4.finngen.fi/pheno/G6_ALZHEIMER|FinnGen Release 4, Alzheimer disease]].
 * **Single-cell sequencing (10x Genomics platform)** * **Single-cell sequencing (10x Genomics platform)**
-  - Gene expression and regulation data analysis +  - Gene expression and regulation data analysis 
 +  - Customized single-cell gene expression browser (UCSC Cell Browser), example [[https://cells.ucsc.edu/?ds=covid19-immuno%2Fall|COVID-19 Immunological Response]].
 * **Method development** * **Method development**
   - New or customized analysis workflow design and development   - New or customized analysis workflow design and development
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 ##Project and user fees ##Project and user fees
  
-Prices (VAT 0%) for all different service options for both internal UEF and external customers are given below. In principal billing is based on project fees and actual working hours. The final price of the service may vary based on the size and complexity of the project. The costs will be estimated separately for each project and agreed with customer before initialization of the project. To request a quote, please contact the UEF Bioinformatcs Center ([[home:contact|Contact information]]). +Prices (VAT 0%) for different service options for both internal UEF and external customers are given below. In principal billing is based on project fees and actual working hours. The final price of the service may vary based on the size and complexity of the project. The costs will be estimated separately for each project and agreed with customer before initialization of the project. To request a quote, please contact the UEF Bioinformatcs Center ([[home:contact|Contact information]]). 
  
  
 ^Infrastructure service                                   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^ ^Infrastructure service                                   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^
-|solu.uef.fi: interactive computing server              |  free|    na|+|tuma.uef.fi: interactive computing server              |  free|    na|
 |sampo.uef.fi: High-Performance Computing cluster |  free|    na| |sampo.uef.fi: High-Performance Computing cluster |  free|    na|
  
 ^Basic analysis service                                                    ^   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^  ^Basic analysis service                                                    ^   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^
-|Project initialization and standard data analysis\\ - includes 10 hours of work     |  500€|  1000€| +|Project initialization and standard data analysis\\ - includes 10 hours of work     |  510€|  890€| 
-| - additional work|  50€/h|  100€/h|+| - additional work|  51€/h|  89€/h|
  
  
 ^Advanced analysis service                                                  Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^  ^Advanced analysis service                                                  Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^
-|Project initialization, customized data analysis\\  - includes 20 hours of work     |  1000€|  2000€| +|Project initialization, customized data analysis\\  - includes 20 hours of work     |  1020€|  1780€| 
-| - additional work|  50€/h|  100€/h|+| - additional work|  51€/h|  89€/h|
  
-^Consulting and Mentoring                                             ^   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^  +^Consulting and Training                                             ^   Price UEF\\ (VAT 0%)^  Price Other\\ (VAT 0%)^  
-|Pre-configured server or container installation\\  - includes 2 hours of work     |  100€/pcs|  200€/pcs| +|Bioinformatics consultation\\  - data analysis and management, experiment design etc. |  51€/h|  89€/h| 
-|Customized, bespoken server or container installation with project special requirements\\  - includes 10 hours of work |     500€/pcs|         1000€/pcs+|Genomic study consultation and coordination\\  - study design, budgeting, choice of genotyping/sequencing provider, bioinformatics etc. |  51€/h|  89€/h| 
-|Workshop or face-to-face training on topics upon request  |  50€/h|  100€/h| +|Pre-configured server or container installation\\  - includes 2 hours of work     |  102€/pcs|  178€/pcs| 
-|Bioinformatics consultation\\  - data management, experiment design etc. |  50€/h|  100€/h| +|Customized, bespoken server or container installation with project special requirements\\  - includes 10 hours of work |     51€/pcs|         890€/pcs|
-|Mentoring within Faculty of Health Sciences\\ - mentoring session biannually for PhD students who performs significant amount of data analysis applying bioinformatics methods (1 hour/session)\\ - other researchers or additional mentoring|  \\ free\\ \\ 50€/h|  \\ na\\ \\ na|+
 |Textual description of required data analysis and data management plan for grant applications| 150€/page| 300€/page| |Textual description of required data analysis and data management plan for grant applications| 150€/page| 300€/page|
 +|Workshop or face-to-face training on topics upon request  |  51€/h|  89€/h|
 +|Mentoring within Faculty of Health Sciences\\ - mentoring session biannually for PhD students who performs significant amount of data analysis applying bioinformatics methods (1 hour/session)\\ - other researchers or additional mentoring|  \\ free\\ \\ 51€/h|  \\ na\\ \\ na|
  
-##Contact information+## Request service
  
-Please find UEF Bioinformatics Center contact information from [[home:contact|Contact information]].+Please use the service request form to suggest or request paid or free service from UEF Bioinformatics Center[[https://link.webropolsurveys.com/S/EDDEDAD2661BC306|Service Request Form]].
home/services.1584186793.txt.gz · Last modified: 14.03.2020 13:53 by Teemu Kuulasmaa