Bioinformatics Center
Services
Infrastructure
Guides
Hosted services
Bioinformatics Center
Services
Infrastructure
Guides
Hosted services
The UEF Bioinformatics Center provides infrastructure, data analysis and consultancy services and training. The UEF Bioinformatic Center has expertise especially in processing data from different omics methodologies and service coverage includes i.a. experimental design, data analysis, data visualization, workflow development and training. The BIC offers services particularly for the UEF research community but services are also available for other Finnish research institutions and non-academic customers. The project requests are evaluated together with customer based on available expertise, feasibility and available resources. A detailed report describing the analysis tools and methods used together with analysis results is provided at the end of each project. The data are analyzed using widely used freely available tools and published or in-house developed workflows. The infrastructure services and training are provided free of charge, but the data analysis and consultancy services are charged based on project fees and actual working hours. The data analysis services are available in two different categories: Basic and Advanced.
Contribution of The UEF Binformatics Center to scientific publication is to be acknowledged in the each article. See more detailed information regarding citing and acknowledgement from Acknowledge or cite.
Basic analysis service covers standardized analysis of genomics or transciptomics sequencing data generated by using Illumina sequencing technology, either single-end or paired-end. Also array based genotype data analysis are supported.
Advanced analysis service include the same standard analysis as basic service, but provides also additional and customized analysis. Also singe-cell sequencing data analysis are supported.
Prices (VAT 0%) for all different service options for both internal UEF and external customers are given below. In principal billing is based on project fees and actual working hours. The final price of the service may vary based on the size and complexity of the project. The costs will be estimated separately for each project and agreed with customer before initialization of the project. To request a quote, please contact the UEF Bioinformatcs Center (Contact information).
Infrastructure service | Price UEF (VAT 0%) | Price Other (VAT 0%) |
---|---|---|
solu.uef.fi: interactive computing server | free | na |
sampo.uef.fi: High-Performance Computing cluster | free | na |
Basic analysis service | Price UEF (VAT 0%) | Price Other (VAT 0%) |
---|---|---|
Project initialization and standard data analysis - includes 10 hours of work | 500€ | 1000€ |
- additional work | 50€/h | 100€/h |
Advanced analysis service | Price UEF (VAT 0%) | Price Other (VAT 0%) |
---|---|---|
Project initialization, customized data analysis - includes 20 hours of work | 1000€ | 2000€ |
- additional work | 50€/h | 100€/h |
Consulting and Mentoring | Price UEF (VAT 0%) | Price Other (VAT 0%) |
---|---|---|
Pre-configured server or container installation - includes 2 hours of work | 100€/pcs | 200€/pcs |
Customized, bespoken server or container installation with project special requirements - includes 10 hours of work | 500€/pcs | 1000€/pcs |
Face-to-face training for researcher(s) on topics upon request - see list of courses from ??? | 50€/h | 100€/h |
Bioinformatics consultation - data management, experiment design etc. | 50€/h | 100€/h |
Textual description of required data analysis and data management plan for grant applications | 150€/page | 300€/page |
Mentoring within Faculty of Health Sciences - mentoring session biannually for PhD students who performs significant amount of data analysis applying bioinformatics methods (1 hour/session) - other researchers or additional mentoring | free 50€/h | na na |
Please find UEF Bioinformatics Center contact information from Contact information.