This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
home:services [15.05.2020 11:11] Teemu Kuulasmaa [Advanced analysis service] |
home:services [12.02.2024 12:43] Administrator |
||
---|---|---|---|
Line 1: | Line 1: | ||
#Services | #Services | ||
- | The UEF Bioinformatics Center provides infrastructure, | + | The UEF Bioinformatics Center provides infrastructure, |
- | Contribution of The UEF Binformatics | + | Contribution of the Bioinformatics |
## Basic analysis service | ## Basic analysis service | ||
Line 28: | Line 28: | ||
Advanced analysis service includes the same standard analysis as basic service, but provides also additional and customized analyses that will be adjusted for each individual project' | Advanced analysis service includes the same standard analysis as basic service, but provides also additional and customized analyses that will be adjusted for each individual project' | ||
+ | |||
+ | UEF Bioinformatics Center collaborates with THL Biobank to offer genetic imputation service using a Finnish haplotype reference panel [[https:// | ||
* **Genomics** | * **Genomics** | ||
Line 40: | Line 42: | ||
- Phenome-wide association testing (PheWAS) | - Phenome-wide association testing (PheWAS) | ||
- Customized statistical analysis | - Customized statistical analysis | ||
- | - Advanced | + | - Customized |
* **Single-cell sequencing (10x Genomics platform)** | * **Single-cell sequencing (10x Genomics platform)** | ||
- | - Gene expression and regulation data analysis | + | - Gene expression and regulation data analysis |
+ | - Customized single-cell gene expression browser (UCSC Cell Browser), example [[https:// | ||
* **Method development** | * **Method development** | ||
- New or customized analysis workflow design and development | - New or customized analysis workflow design and development | ||
Line 48: | Line 51: | ||
##Project and user fees | ##Project and user fees | ||
- | Prices (VAT 0%) for all different service options for both internal UEF and external customers are given below. In principal billing is based on project fees and actual working hours. The final price of the service may vary based on the size and complexity of the project. The costs will be estimated separately for each project and agreed with customer before initialization of the project. To request a quote, please contact the UEF Bioinformatcs Center ([[home: | + | Prices (VAT 0%) for different service options for both internal UEF and external customers are given below. In principal billing is based on project fees and actual working hours. The final price of the service may vary based on the size and complexity of the project. The costs will be estimated separately for each project and agreed with customer before initialization of the project. To request a quote, please contact the UEF Bioinformatcs Center ([[home: |
^Infrastructure service | ^Infrastructure service | ||
- | |solu.uef.fi: interactive computing server | + | |tuma.uef.fi: interactive computing server |
|sampo.uef.fi: | |sampo.uef.fi: | ||
^Basic analysis service | ^Basic analysis service | ||
- | |Project initialization and standard data analysis\\ - includes 10 hours of work | + | |Project initialization and standard data analysis\\ - includes 10 hours of work |
- | | - additional work| | + | | - additional work| |
^Advanced analysis service | ^Advanced analysis service | ||
- | |Project initialization, | + | |Project initialization, |
- | | - additional work| | + | | - additional work| |
^Consulting and Training | ^Consulting and Training | ||
- | |Bioinformatics consultation\\ | + | |Bioinformatics consultation\\ |
- | |Pre-configured server or container installation\\ | + | |Genomic study consultation and coordination\\ |
- | |Customized, | + | |Pre-configured server or container installation\\ |
+ | |Customized, | ||
|Textual description of required data analysis and data management plan for grant applications| 150€/ | |Textual description of required data analysis and data management plan for grant applications| 150€/ | ||
- | |Workshop or face-to-face training on topics upon request | + | |Workshop or face-to-face training on topics upon request |
- | |Mentoring within Faculty of Health Sciences\\ - mentoring session biannually for PhD students who performs significant amount of data analysis applying bioinformatics methods (1 hour/ | + | |Mentoring within Faculty of Health Sciences\\ - mentoring session biannually for PhD students who performs significant amount of data analysis applying bioinformatics methods (1 hour/ |
## Request service | ## Request service | ||
- | Please use the service request form to suggest or request paid or free service from UEF Bioinformatics Center: [[https://elomake.uef.fi/lomakkeet/25528/ | + | Please use the service request form to suggest or request paid or free service from UEF Bioinformatics Center: [[https://link.webropolsurveys.com/S/EDDEDAD2661BC306|Service Request Form]]. |