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guides:available-applications [13.10.2020 12:12]
Juha Kekäläinen 		guides:available-applications [11.12.2020 13:30]
Juha Kekäläinen
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-#Available applications on SOLU and SAMPO servers+#Available applications on BIC servers
  
 Most of the preinstalled applications on the computing servers are installed as [environment modules](https://lmod.readthedocs.io/en/latest/). Most of the preinstalled applications on the computing servers are installed as [environment modules](https://lmod.readthedocs.io/en/latest/).
  
-To use application you first must activate it. This will modify the [environment variables](https://en.wikipedia.org/wiki/Environment_variable) so that the application and all its dependencies are found.+To use application you first must activate it. This will modify the [environment variables](https://en.wikipedia.org/wiki/Environment_variable) of the user so that the application and all its dependencies are available for usage.
  
 **To find the available modules you will need to use the following command in terminal** **To find the available modules you will need to use the following command in terminal**
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 This will give you an list of all the available modules. This will give you an list of all the available modules.
-For example list of available applications (13.01.2020) below:+For example list of available applications on SAMPO cluster (13.01.2020):
        
    ambertools/20      eagle/2.4.1                  nextflow/19.10          snptest/2.5.2    ambertools/20      eagle/2.4.1                  nextflow/19.10          snptest/2.5.2
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    diamond/0.9.21     openjdk/11.0.2               python/3.7.3    diamond/0.9.21     openjdk/11.0.2               python/3.7.3
  
 +** You can search for an package with 'spider' command**
 +
 +    module spider homer
  
 ** To activate the application you can use the following command** ** To activate the application you can use the following command**
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     module load bowtie2     module load bowtie2
  
-Note that you can activate multiple applications **but** you cannot activate multiple versions of the same application.+Note: You can activate multiple applications **but** you cannot activate multiple versions of the same application.
  
  
-** If you wish to Load some specific version number **+** If you wish to Load some specific version number of the application **
  
     module load bowtie2/2.3.4.1     module load bowtie2/2.3.4.1
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     module restore     module restore
  
 +Note: If you add this line to your $HOME/.bashrc file then the modules are automatically loaded on login.
  
-** You can quickly go to the application location**+** You can quickly go to the application installation path**
  
  
     module load bowtie2     module load bowtie2
     cd $BOWTIE2_ROOT     cd $BOWTIE2_ROOT
 +    
 + 
  
guides/available-applications.txt · Last modified: 09.06.2021 14:10 by Administrator

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