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guides:application-installation [29.10.2019 15:10] 127.0.0.1 external edit |
guides:application-installation [14.03.2020 14:03] (current) Teemu Kuulasmaa |
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There are four different methods to get your favorite application installed on Bioinformatics Center' | There are four different methods to get your favorite application installed on Bioinformatics Center' | ||
- | ## 1. Download binaries | + | ## Download binaries |
You can always download already compiled binaries from Internet. All you need to do is extract downloaded archive file (e.g. *.gz, *.zip) files to any directory (e.g. $HOME/ | You can always download already compiled binaries from Internet. All you need to do is extract downloaded archive file (e.g. *.gz, *.zip) files to any directory (e.g. $HOME/ | ||
- | ## 2. Download source code and compile | + | ## Download source code and compile |
Always ready-made binaries are not available or you need to recompile application from the source code again. In this case download the source code to the server, extract source code and follow installation instructions. Normally you will find compilation and installation instructions from among the downloaded files (search for README or INSTALLATION files). The most often you just need to do something like this: | Always ready-made binaries are not available or you need to recompile application from the source code again. In this case download the source code to the server, extract source code and follow installation instructions. Normally you will find compilation and installation instructions from among the downloaded files (search for README or INSTALLATION files). The most often you just need to do something like this: | ||
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``` | ``` | ||
- | ## 3. Use conda and configure Bioconda channel | + | ## Use conda and configure Bioconda channel |
Follow instructions from [[https:// | Follow instructions from [[https:// | ||
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``` | ``` | ||
- | ## 4. Request system wide install | + | ## Request system wide install |
If you prefer to have system wide installation of you favorite application you need to send software installation request to bioinformatics@uef.fi. The system wide installation requires system administrator privileges. | If you prefer to have system wide installation of you favorite application you need to send software installation request to bioinformatics@uef.fi. The system wide installation requires system administrator privileges. |